Jatropha Genome Database

JcCB0826111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0826111.10 + phase: 0 /partial/short
         (47 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29827.m002559 glycine cleavage system h protein, putative              59   5e-10

>29827.m002559 glycine cleavage system h protein, putative
          Length = 165

 Score = 58.9 bits (141), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/36 (86%), Positives = 31/36 (86%), Gaps = 1/36 (2%)

Query: 1  MALRMWASSTANALKISVASKPQLSP-YCLSRCFSS 35
          MALRMWASSTAN LKISVA K QLSP Y LSRCFSS
Sbjct: 1  MALRMWASSTANTLKISVACKAQLSPSYSLSRCFSS 36