Jatropha Genome Database

JcCB0824821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0824821.10 - phase: 2 /partial
         (135 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29866.m000624 transcription initiation factor ia, putative            201   8e-53

>29866.m000624 transcription initiation factor ia, putative
          Length = 640

 Score =  201 bits (511), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 94/118 (79%), Positives = 104/118 (88%)

Query: 18  RLVDWCLEYCKTQDGHMNPKAHRVFYSGCQAIMYVLCFRMRSIMDVPGLKSHLLLKPMEL 77
           RLVDWC EYC+ QDG MNPKAHRVFYSGCQAI+YVLCFRM S+MD+P LKS LL  P+E 
Sbjct: 411 RLVDWCSEYCRNQDGDMNPKAHRVFYSGCQAILYVLCFRMSSMMDIPWLKSQLLHMPLEQ 470

Query: 78  ILKHKLDPLKVCLPSIVEEFLKQAKAAHLFTTPETFISEDLLESEFSREFGGLERLDM 135
           I+KHKL PLKVCLPSIVEEFLKQAKAAHLFTT +T   ED+LESEFS++FGGLERLDM
Sbjct: 471 IMKHKLGPLKVCLPSIVEEFLKQAKAAHLFTTSQTSSFEDVLESEFSKDFGGLERLDM 528