Jatropha Genome Database

JcCB0813871.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0813871.10 + phase: 0 
         (202 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30146.m003502 Auxin-responsive protein IAA6, putative                 218   2e-57

>30146.m003502 Auxin-responsive protein IAA6, putative
          Length = 320

 Score =  218 bits (554), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 119/173 (68%), Positives = 126/173 (72%), Gaps = 22/173 (12%)

Query: 1   MEGGSKNGEACPQLLDLIPREREWLVKRADERSTEE--KKLELRLGPPGEEWSLGKTAKN 58
           MEG SKN E CPQLLDLIPREREWLVKR DE+S+ E  KKLELRL PPG+EWSL  + KN
Sbjct: 1   MEGCSKNSETCPQLLDLIPREREWLVKRTDEKSSSEEIKKLELRLAPPGQEWSLNDSTKN 60

Query: 59  SD-DRVRDEFLLSLGNQQTHKFSSPENTRAGSVWFNQQLSQQAKAAT----PFLQFPPKT 113
           +D +R RDE LLSLG                S WFNQQLSQQ KA T     FLQFP KT
Sbjct: 61  ADINRERDESLLSLG---------------ASGWFNQQLSQQGKATTTTTPSFLQFPSKT 105

Query: 114 VTTTQQSLPVTGKESSLPCCTKVVVDLQQSAEKKGFSQPTPANTAVPNSSQKR 166
           VTT  Q+LPV  KESS PCCTKVVVDLQQSAEKK FSQP PANTAVPN SQKR
Sbjct: 106 VTTNAQNLPVMAKESSQPCCTKVVVDLQQSAEKKAFSQPAPANTAVPNISQKR 158