Jatropha Genome Database

JcCB0813641.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0813641.10 + phase: 0 /pseudo/partial
         (166 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30143.m001198 conserved hypothetical protein                          208   8e-55
29973.m000398 hypothetical protein                                    118   2e-27

>30143.m001198 conserved hypothetical protein
          Length = 209

 Score =  208 bits (530), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 106/125 (84%), Positives = 109/125 (87%), Gaps = 1/125 (0%)

Query: 43  LGANYLFCSFAATFSEKVTRTVRKFSPHLAAKMRPPHMPVIRGR-SAKKSVYICGQPRGV 101
           L   +L  SFAATFSEKVTRTVRK SPH AAKMRPPHMPVIRGR SAKKSVYICGQPRGV
Sbjct: 85  LSIAFLNDSFAATFSEKVTRTVRKVSPHWAAKMRPPHMPVIRGRPSAKKSVYICGQPRGV 144

Query: 102 CVFLFSAASIILWFTSGSLLYVLWAFGIGLLVTIIHASVRTPNLKARLNTFREEFRAVWR 161
            VFLFSAAS ILWFTS SL  VLWA GIGLLVT++HAS RTPNLKARLNTFREEFR VWR
Sbjct: 145 FVFLFSAASFILWFTSSSLWTVLWALGIGLLVTVLHASARTPNLKARLNTFREEFRQVWR 204

Query: 162 NYSEL 166
           NYSEL
Sbjct: 205 NYSEL 209


>29973.m000398 hypothetical protein
          Length = 376

 Score =  118 bits (295), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 60/89 (67%), Positives = 70/89 (78%), Gaps = 1/89 (1%)

Query: 47  YLFCSFAATFSEKVTRTVRKFSPHLAAKMRPPHMPVIRGR-SAKKSVYICGQPRGVCVFL 105
           +L  SFA TFSEK TRTVR+FSPHLAAKMRPP  PVIRGR SAK++++ICG+PR V V +
Sbjct: 84  FLNDSFAGTFSEKATRTVRQFSPHLAAKMRPPLTPVIRGRPSAKRAIHICGRPRWVFVLI 143

Query: 106 FSAASIILWFTSGSLLYVLWAFGIGLLVT 134
           FS  S ILW+ S  LL VLWA  IGLLV+
Sbjct: 144 FSIVSFILWYASCGLLTVLWALAIGLLVS 172