Jatropha Genome Database

JcCB0812861.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0812861.10 - phase: 0 /partial
         (104 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29601.m000448 Late seed maturation protein P8B6, putative             162   4e-41
29814.m000729 Embryonic abundant protein, putative                    105   4e-24

>29601.m000448 Late seed maturation protein P8B6, putative
          Length = 112

 Score =  162 bits (409), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 83/91 (91%), Positives = 90/91 (98%)

Query: 1  MATEQERAELDARARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYKELG 60
          M+++QERAELDARA++GETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYKELG
Sbjct: 1  MSSDQERAELDARAKRGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYKELG 60

Query: 61 HRGGETRREQIGHEGYQEMGRKGGLSTMDKS 91
          H+GGETRREQIG EGYQEMGRKGGLST+DKS
Sbjct: 61 HKGGETRREQIGTEGYQEMGRKGGLSTIDKS 91


>29814.m000729 Embryonic abundant protein, putative
          Length = 94

 Score =  105 bits (263), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 62/93 (66%), Positives = 68/93 (73%), Gaps = 22/93 (23%)

Query: 1  MATEQE--RAELDARARQGETVVPGGTGGKSLEAQEHLAEGRSRGGQTRREQLGTEGYKE 58
          M+T+Q+  R ELD RARQGETV+PGGTGGKSLEAQEHLAEGRSRGGQTR+EQLGTEG   
Sbjct: 1  MSTDQQQSREELDNRARQGETVIPGGTGGKSLEAQEHLAEGRSRGGQTRKEQLGTEG--- 57

Query: 59 LGHRGGETRREQIGHEGYQEMGRKGGLSTMDKS 91
                           YQEMGRKGGLST D+S
Sbjct: 58 -----------------YQEMGRKGGLSTTDES 73