Jatropha Genome Database

JcCB0800111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0800111.10 + phase: 0 /pseudo
         (94 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29680.m001682 conserved hypothetical protein                           93   3e-20
29895.m000316 conserved hypothetical protein                           68   9e-13

>29680.m001682 conserved hypothetical protein
          Length = 328

 Score = 93.2 bits (230), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 37/39 (94%), Positives = 39/39 (100%)

Query: 18 RSHGNYTNPCLTMHQPWASLLVYGIKRIEGRSWPAPIRG 56
          RSHGNYTNPCLTMHQPWASLLVYGIKRIEGRSWP+P+RG
Sbjct: 4  RSHGNYTNPCLTMHQPWASLLVYGIKRIEGRSWPSPVRG 42


>29895.m000316 conserved hypothetical protein
          Length = 213

 Score = 68.2 bits (165), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 29/39 (74%), Positives = 35/39 (89%)

Query: 18 RSHGNYTNPCLTMHQPWASLLVYGIKRIEGRSWPAPIRG 56
          ++  + TN CLT+HQPWASLLV+GIKR+EGRSWPAPIRG
Sbjct: 4  KNTKHCTNSCLTLHQPWASLLVHGIKRVEGRSWPAPIRG 42