Jatropha Genome Database

JcCB0799991.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0799991.10 - phase: 0 /partial
         (112 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29806.m000944 hypothetical protein                                    118   6e-28

>29806.m000944 hypothetical protein
          Length = 176

 Score =  118 bits (296), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 56/74 (75%), Positives = 61/74 (82%)

Query: 2   QVRLGTEKGSLVVKVAIVALYSLLSIFVLSNALPFTCLLLCDLTIPMGNLVVRYVEENHK 61
           QVRLGTE+GS VVK A + LYSLL  F LS ALPF C+LLC LT+P G LVV +VEENHK
Sbjct: 73  QVRLGTERGSYVVKAATITLYSLLLAFGLSRALPFPCILLCALTVPTGKLVVSFVEENHK 132

Query: 62  DKGKIFMAKYYCVR 75
           DKGKIFMAKYYCVR
Sbjct: 133 DKGKIFMAKYYCVR 146