Jatropha Genome Database

JcCB0795791.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0795791.10 + phase: 0 /partial
         (217 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28011.m000078 protein farnesyltransferase alpha subunit, putative     384   e-107
29908.m006276 rab geranylgeranyl transferase alpha subunit, puta...    64   6e-11

>28011.m000078 protein farnesyltransferase alpha subunit, putative
          Length = 333

 Score =  384 bits (985), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 180/213 (84%), Positives = 195/213 (91%)

Query: 5   HHRRWAAEKLGIDATAKELEFTRKILSLDAKNYHAWSHRQWVLQALGGWEDELNYIRQLL 64
           HHRRW AEKLG DA AKEL+FTRKILSLDAKNYHAWSHRQWVLQALGGWEDEL+Y RQLL
Sbjct: 119 HHRRWVAEKLGTDAAAKELQFTRKILSLDAKNYHAWSHRQWVLQALGGWEDELDYCRQLL 178

Query: 65  EDDVFNNSAWNQRYFVITRSPFLGGLKAMRESEVKYTIEAILANPENESPWRYLRGLYKD 124
           E DVFNNSAWNQRYF+ITRSP LGGLKA+RESE+K+T+EAILANPENESPWRYLRGLY+ 
Sbjct: 179 EHDVFNNSAWNQRYFIITRSPLLGGLKAVRESEMKFTVEAILANPENESPWRYLRGLYQG 238

Query: 125 DTESWINDHQVSTVCLKVLSVKTNHIFALSTLLDLLCHGFKAKQEFRDAVDALRASDPDP 184
           DT+SWIND QVS+VCLKVLS KTNHIFALS LLDLLCHGF+A QE RD+VDALR S+ DP
Sbjct: 239 DTQSWINDPQVSSVCLKVLSAKTNHIFALSMLLDLLCHGFQANQEIRDSVDALRTSNCDP 298

Query: 185 PEPDLAKAVCSVLERVDPMRVNYWIWRKNKRPA 217
           PEPDLAKAVCS+LE VDPMR NYWIWRK+K P 
Sbjct: 299 PEPDLAKAVCSLLEHVDPMRANYWIWRKSKLPV 331


>29908.m006276 rab geranylgeranyl transferase alpha subunit,
           putative
          Length = 696

 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 7/119 (5%)

Query: 5   HHRRWAAEKLGIDATAKELEFTRKILSLDAKNYHAWSHRQWVLQALGGWE-DELNYIRQL 63
           HHR+W   K G  +  KEL+   K+ ++D++N+HAWS+R++V Q +   E DEL+Y   L
Sbjct: 109 HHRKWVLCK-GHSSIDKELKLLDKLFTIDSRNFHAWSYRRFVAQLMNRSEKDELDYTECL 167

Query: 64  LEDDVFNNSAWNQRYFVITR--SPFLGGLKAMRE---SEVKYTIEAILANPENESPWRY 117
           +  +  N SAW+ R F+++      + G     E    E +   +A+  + +++S W Y
Sbjct: 168 IGKNFSNYSAWHNRSFLLSNLVKKSVEGFSEKNEVLTREYELVRDAVFTDQDDQSGWFY 226