Jatropha Genome Database

JcCB0781371.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0781371.10 + phase: 0 /pseudo/partial
         (87 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29739.m003681 conserved hypothetical protein                          134   7e-33

>29739.m003681 conserved hypothetical protein
          Length = 713

 Score =  134 bits (338), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 66/74 (89%), Positives = 73/74 (98%)

Query: 1   ELEKSLKATCEEFIMSVTKLIVDPMLSFATKVTAVKVALSSGSQNQKVESIMAKPLKDQA 60
           ELEKSLKATCEEFIMSVTKL+VDPMLSFATKVTAVKVALSSGSQ++KV+SIM KPLKDQA
Sbjct: 565 ELEKSLKATCEEFIMSVTKLVVDPMLSFATKVTAVKVALSSGSQSEKVDSIMGKPLKDQA 624

Query: 61  FASPEKVAELVQKV 74
           FA+P+KVAELV+KV
Sbjct: 625 FATPDKVAELVEKV 638