Jatropha Genome Database

JcCB0779721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0779721.10 - phase: 0 
         (92 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014530 WD-repeat protein, putative                             145   5e-36
30170.m013860 WD-repeat protein, putative                              54   2e-08

>30147.m014530 WD-repeat protein, putative
          Length = 471

 Score =  145 bits (365), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 65/75 (86%), Positives = 70/75 (93%)

Query: 1  MGKGREALVACSDRSMGTGITVWDLETGDRLMHIPTCASPAHGLLCLRDQFLVASQVNKH 60
          MG+GREALV CSDRSMGTGI++WD+ETGDRLMHIPTCAS  HGLLCL+DQFLVASQVNKH
Sbjct: 1  MGRGREALVGCSDRSMGTGISIWDVETGDRLMHIPTCASAPHGLLCLKDQFLVASQVNKH 60

Query: 61 GSVGGGAIFIWQLNK 75
          GSVGGGAIF W LNK
Sbjct: 61 GSVGGGAIFTWPLNK 75


>30170.m013860 WD-repeat protein, putative
          Length = 452

 Score = 53.5 bits (127), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 3/71 (4%)

Query: 5  REALVACSDRSMGTGITVWDLETGDRLMHIPTCASPAHGLLCLRDQFLVASQVNKHGSVG 64
           E L+A S  S+  GI  WDL+TG   +   +CASP HGL C+  +FL ASQ+ +     
Sbjct: 3  EELLLASS--SIDGGIGCWDLQTGAEHLRYKSCASPPHGLTCVGSRFLAASQL-RDSHAS 59

Query: 65 GGAIFIWQLNK 75
           G+I  W  +K
Sbjct: 60 SGSIVYWSWSK 70