Jatropha Genome Database

JcCB0771211.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0771211.10 + phase: 0 /pseudo/partial
         (114 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29883.m002037 conserved hypothetical protein                           84   2e-17
29822.m003365 conserved hypothetical protein                           62   4e-11
27894.m000790 conserved hypothetical protein                           48   1e-06

>29883.m002037 conserved hypothetical protein
          Length = 500

 Score = 83.6 bits (205), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 37/42 (88%), Positives = 38/42 (90%)

Query: 4   YIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGTGFPFGCNV 45
           YIGSSCSLLVIDRGNRAIREIQLHFDDCAYQY +GFP G  V
Sbjct: 214 YIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYESGFPLGVAV 255


>29822.m003365 conserved hypothetical protein
          Length = 494

 Score = 62.4 bits (150), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 30/44 (68%), Positives = 33/44 (75%)

Query: 2   MGYIGSSCSLLVIDRGNRAIREIQLHFDDCAYQYGTGFPFGCNV 45
           + YIGSSCSLLVIDRGN+AIREIQL+ DDC  QY   F  G  V
Sbjct: 203 IAYIGSSCSLLVIDRGNQAIREIQLNDDDCNNQYDGTFHLGIAV 246


>27894.m000790 conserved hypothetical protein
          Length = 484

 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 26/31 (83%)

Query: 4   YIGSSCSLLVIDRGNRAIREIQLHFDDCAYQ 34
           Y+ S+CSLLV+DRGN A+R+I L+ +DC YQ
Sbjct: 201 YVHSTCSLLVVDRGNVALRQISLNQEDCDYQ 231