Jatropha Genome Database

JcCB0768001.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0768001.10 - phase: 0 
         (66 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008623 Zeta-carotene desaturase, chloroplast precursor, p...    90   2e-19

>30128.m008623 Zeta-carotene desaturase, chloroplast precursor,
          putative
          Length = 964

 Score = 90.1 bits (222), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/67 (73%), Positives = 52/67 (77%), Gaps = 1/67 (1%)

Query: 1  MASSILFPTNSITGTRSKNPGFLPSCGRRS-VAQVVRTQRLSFVRSALDSLETKVSDMSV 59
          MASSIL P NS+ GTR + PGFL S  RRS  AQVVRTQRL FVRSALDSLETKVSDMSV
Sbjct: 2  MASSILLPANSVAGTRRRTPGFLLSGDRRSSTAQVVRTQRLFFVRSALDSLETKVSDMSV 61

Query: 60 NGTSLIF 66
          N    +F
Sbjct: 62 NAPKGLF 68