Jatropha Genome Database

JcCB0765881.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0765881.10 - phase: 2 /pseudo/partial
         (116 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30027.m000845 Ubiquitin carboxyl-terminal hydrolase, putative         136   2e-33

>30027.m000845 Ubiquitin carboxyl-terminal hydrolase, putative
          Length = 791

 Score =  136 bits (343), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 62/71 (87%), Positives = 66/71 (92%), Gaps = 3/71 (4%)

Query: 25  QTEMTTAERELDQNFNFDWNRIQESGEELEPIFGPGYTGLVNLGNSCYMAATMQVVFSTR 84
           +TEMTTAERELDQNFNFDWNRIQESG+ELEPIFGPGYTGL NLGNSCYMAATMQVVFSTR
Sbjct: 271 KTEMTTAERELDQNFNFDWNRIQESGQELEPIFGPGYTGLRNLGNSCYMAATMQVVFSTR 330

Query: 85  SFCTRSVPFYA 95
           SF +R   +YA
Sbjct: 331 SFSSR---YYA 338