Jatropha Genome Database

JcCB0763251.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0763251.10 + phase: 0 /partial
         (204 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29929.m004547 ornithine decarboxylase, putative                       261   2e-70
30170.m014298 ornithine decarboxylase, putative                       220   4e-58
30170.m014299 ornithine decarboxylase, putative                       202   1e-52
30170.m014295 ornithine decarboxylase, putative                        69   2e-12

>29929.m004547 ornithine decarboxylase, putative
          Length = 203

 Score =  261 bits (667), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 124/184 (67%), Positives = 152/184 (82%), Gaps = 1/184 (0%)

Query: 1   MAFNMVDANA-LKSCSLKVISEANRLKGQQVFQIEKGSLDSLTQSISDNQEEAEPFYLID 59
           MAFN  +++  L    LKVI EA+R+K Q+  ++ +GSL+SL  SIS+NQEEAEPFY++D
Sbjct: 1   MAFNPDNSDGHLNPIRLKVILEASRVKDQEAVEVPRGSLNSLNMSISENQEEAEPFYILD 60

Query: 60  LGVVIRLMDKWNQSLPNVKPFYAVKCNTEPALLLSLATLGANFDCASQAEIETILGLGVN 119
           +GVVI L++KW+  LP+VKPFYAVK N E ALL+ LATLGANFDCASQAEIE ILGLG++
Sbjct: 61  IGVVISLVEKWSHHLPHVKPFYAVKRNNESALLIVLATLGANFDCASQAEIEAILGLGIS 120

Query: 120 PDRIMYANPCKSVSHIKYAARVGVNLTTFDSKQEVDKIKKWHPKCELLLRLKVPNESSCW 179
           PDRI+YANPCKSVSHIKYAARVGV LTTFDSK+EVDKI+KWHP+C LLLR ++ N+ S W
Sbjct: 121 PDRILYANPCKSVSHIKYAARVGVYLTTFDSKEEVDKIRKWHPQCSLLLRAEIQNDKSSW 180

Query: 180 RPLG 183
             L 
Sbjct: 181 IHLA 184


>30170.m014298 ornithine decarboxylase, putative
          Length = 416

 Score =  220 bits (560), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 111/193 (57%), Positives = 143/193 (74%), Gaps = 4/193 (2%)

Query: 15  SLKVISEANRLKGQQVFQIEKG--SLDSLTQS-ISDNQEEAEPFYLIDLGVVIRLMDKWN 71
           S++VI  A  ++G+ V  + K   SL    QS I + Q   EPFY+++LG V  LMD W+
Sbjct: 6   SMQVIIAAPGVEGKTVKSLPKTEHSLTEFVQSVILNTQVTKEPFYVLNLGAVAELMDTWS 65

Query: 72  QSLPNVKPFYAVKCNTEPALLLSLATLGANFDCASQAEIETILGLGVNPDRIMYANPCKS 131
           + LP ++PFYAVKCN+EP+LL +LA LG NFDCAS+ EI+TIL LGV+PDRI+YANPCK+
Sbjct: 66  RQLPMIQPFYAVKCNSEPSLLGALAALGCNFDCASKVEIQTILSLGVSPDRIVYANPCKA 125

Query: 132 VSHIKYAARVGVNLTTFDSKQEVDKIKKWHPKCELLLRLKVPNESSC-WRPLGNKYGALT 190
            SH+KYAA VGVNLTTFDS  E+DKI K HP+C LLLRLK P++S+  W  LG+K+GAL 
Sbjct: 126 ESHLKYAASVGVNLTTFDSVYELDKISKLHPRCALLLRLKSPDDSAAKWASLGSKFGALP 185

Query: 191 EEVASLLQHANQA 203
           +EV  LL+ A  A
Sbjct: 186 QEVEPLLRAAQAA 198


>30170.m014299 ornithine decarboxylase, putative
          Length = 416

 Score =  202 bits (513), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 101/184 (54%), Positives = 133/184 (72%), Gaps = 3/184 (1%)

Query: 13  SCSLKVISEANRLKGQQVFQIEKGS---LDSLTQSISDNQEEAEPFYLIDLGVVIRLMDK 69
           S SL+VI +A  ++G+ V  + K S    D +   I + Q   E FY++DLG V  LM K
Sbjct: 5   SGSLQVILDAPGVQGKTVTTLSKDSSNLTDYVESIIVNTQVNRESFYVLDLGAVAGLMHK 64

Query: 70  WNQSLPNVKPFYAVKCNTEPALLLSLATLGANFDCASQAEIETILGLGVNPDRIMYANPC 129
           W++ LP ++P+YAVKCN+E +L+ +LA LG NFDCAS+AEI++IL LGV+PDRI+YANP 
Sbjct: 65  WSRELPMIQPYYAVKCNSEISLIGALAALGCNFDCASKAEIQSILSLGVSPDRIIYANPS 124

Query: 130 KSVSHIKYAARVGVNLTTFDSKQEVDKIKKWHPKCELLLRLKVPNESSCWRPLGNKYGAL 189
           K  SHI YAA V VNLTTFDSK E+ KI K HPKC LL+R+K P++S    PLG+K+GAL
Sbjct: 125 KPESHIIYAANVDVNLTTFDSKHELHKISKCHPKCSLLIRIKPPDDSGARWPLGSKFGAL 184

Query: 190 TEEV 193
            EE+
Sbjct: 185 PEEI 188


>30170.m014295 ornithine decarboxylase, putative
          Length = 78

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 28/45 (62%), Positives = 38/45 (84%)

Query: 67  MDKWNQSLPNVKPFYAVKCNTEPALLLSLATLGANFDCASQAEIE 111
           MDKW ++LP V+P YAVKCN EP  + +LATLG+NFDCAS+A+++
Sbjct: 1   MDKWTRTLPMVRPLYAVKCNPEPTPVGTLATLGSNFDCASRADLK 45