Jatropha Genome Database

JcCB0762681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0762681.10 + phase: 0 /partial
         (107 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30205.m001606 chaperonin containing t-complex protein 1, zeta su...   191   5e-50
30170.m014313 chaperonin containing t-complex protein 1, beta su...    58   8e-10
29950.m001141 chaperonin containing t-complex protein 1, theta s...    52   6e-08
29171.m000267 chaperonin containing t-complex protein 1, eta sub...    49   6e-07
29656.m000497 chaperonin containing t-complex protein 1, gamma s...    47   1e-06

>30205.m001606 chaperonin containing t-complex protein 1, zeta
           subunit, tcpz, putative
          Length = 535

 Score =  191 bits (486), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 90/99 (90%), Positives = 97/99 (97%)

Query: 1   GAGAFEFAARKYLINEVKKTVKGRAQLGVEAFADALLVVPKTLAENSGLDTQDEIVALTG 60
           GAGAFE AARKYLI+EVKKTVKGRAQLG+EAFADALLV+PKTLAENSGLDTQDEIV+LTG
Sbjct: 413 GAGAFELAARKYLISEVKKTVKGRAQLGIEAFADALLVIPKTLAENSGLDTQDEIVSLTG 472

Query: 61  EHDRDNIVGINLQTGGALDPQMEGIFDNYSVKRQIINSG 99
           EHDR+NIVG+NLQTGG LDPQMEGIFDNYSVKRQ+INSG
Sbjct: 473 EHDRENIVGLNLQTGGPLDPQMEGIFDNYSVKRQLINSG 511


>30170.m014313 chaperonin containing t-complex protein 1, beta
           subunit, tcpb, putative
          Length = 512

 Score = 58.2 bits (139), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 53/87 (60%), Gaps = 1/87 (1%)

Query: 14  INEVKKTVKGRAQLGVEAFADALLVVPKTLAENSGLDTQDEIVALTGEHDRD-NIVGINL 72
           ++E+ +   G+    +EAF+ AL+ +P T+A+N+GLD+ + I  L  EH ++ +  GI++
Sbjct: 401 VDELARATPGKKSHAIEAFSRALIAIPTTIADNAGLDSAEMIAQLRAEHQKEGSTAGIDV 460

Query: 73  QTGGALDPQMEGIFDNYSVKRQIINSG 99
            TG   D    GI +++ VK+ ++ S 
Sbjct: 461 ITGSVGDMAERGISESFKVKQAVLLSA 487


>29950.m001141 chaperonin containing t-complex protein 1, theta
           subunit, tcpq, putative
          Length = 517

 Score = 52.0 bits (123), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 50/94 (53%), Gaps = 4/94 (4%)

Query: 1   GAGAFEFA-ARKYLINEVKKTVKGRAQLGVEAFADALLVVPKTLAENSGLDTQDEIVALT 59
           GA A E   ARK      K+T  G  Q  +  FA++  +VPKTLAEN+GL+  + I +L 
Sbjct: 413 GAAATEIELARKLKEFSFKET--GLDQYAIAKFAESFEMVPKTLAENAGLNAMEIISSLY 470

Query: 60  GEHDRDNI-VGINLQTGGALDPQMEGIFDNYSVK 92
            EH   NI VGI+L  G   D     I+D Y  K
Sbjct: 471 AEHASGNIKVGIDLDGGVCKDISTLNIWDLYVTK 504


>29171.m000267 chaperonin containing t-complex protein 1, eta
           subunit, tcph, putative
          Length = 563

 Score = 48.5 bits (114), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 5/103 (4%)

Query: 1   GAGAFEFAARKYLINEVKKTVKGRAQLGVEAFADALLVVPKTLAENSGLDTQDEIVALTG 60
           G GA +    ++L  +  +T+ G++QL + ++A AL V+P+ L +N+G D  D +  L  
Sbjct: 411 GGGAIDMEISRFL-RQHARTIAGKSQLFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQ 469

Query: 61  EHDRDN----IVGINLQTGGALDPQMEGIFDNYSVKRQIINSG 99
           +H   +      G+++ TGG  D     +++   VK   IN+ 
Sbjct: 470 KHALPSGEGAPFGVDINTGGIADSFANFVWEPAVVKINAINAA 512


>29656.m000497 chaperonin containing t-complex protein 1, gamma
           subunit, tcpg, putative
          Length = 554

 Score = 47.4 bits (111), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 3/96 (3%)

Query: 1   GAGAFEFAARKYLINEVKKTVKGRAQLGVEAFADALLVVPKTLAENSGLDTQDEIVALTG 60
           G GA E      L  +   +V+G  +   EA A A   +P+TLA+N G++    + AL G
Sbjct: 409 GGGATELTVSATL-KQKSSSVEGIEKWPYEAAALAFEAIPRTLAQNCGVNVIRTMTALQG 467

Query: 61  EH-DRDN-IVGINLQTGGALDPQMEGIFDNYSVKRQ 94
           +H + DN  VGI+  TG   D +   I+D Y+VK Q
Sbjct: 468 KHANGDNAWVGIDGNTGEITDMKERKIWDAYNVKAQ 503