Jatropha Genome Database

JcCB0762541.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0762541.10 + phase: 2 /partial
         (69 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29784.m000370 Arginine/serine-rich-splicing factor, putative          132   5e-32
30190.m011248 Arginine/serine-rich-splicing factor, putative          103   2e-23
29751.m001798 FUS-interacting serine-arginine-rich protein 1 (TL...    94   1e-20
29154.m000213 cold-inducible RNA binding protein, putative             51   1e-07
28462.m000127 glycine-rich RNA-binding protein, putative               48   9e-07
29608.m000212 Heterogeneous nuclear ribonucleoprotein 27C, putative    46   3e-06
29709.m001182 RNA binding protein, putative                            46   4e-06
27613.m000635 Heterogeneous nuclear ribonucleoprotein 27C, putative    45   7e-06
30131.m007093 RNA-binding protein, putative                            45   9e-06

>29784.m000370 Arginine/serine-rich-splicing factor, putative
          Length = 248

 Score =  132 bits (331), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 62/68 (91%), Positives = 66/68 (97%)

Query: 2   DAINPGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVEA 61
           +A+NPGNTLYVTGLSTRVTER LEEHF+KEGKVASCFLVVEPRTRISRGFAFVTMDNVE 
Sbjct: 68  EAVNPGNTLYVTGLSTRVTERGLEEHFAKEGKVASCFLVVEPRTRISRGFAFVTMDNVED 127

Query: 62  ANRCVKHL 69
           ANRCVK+L
Sbjct: 128 ANRCVKYL 135


>30190.m011248 Arginine/serine-rich-splicing factor, putative
          Length = 204

 Score =  103 bits (256), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/68 (72%), Positives = 55/68 (80%)

Query: 2   DAINPGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVEA 61
           DA NPGN LYVTGLSTRVT  DLE++F KEGKV  C LV +PRTR SRGFAFVTM+ +E 
Sbjct: 41  DAANPGNNLYVTGLSTRVTTGDLEKYFGKEGKVLECHLVTDPRTRESRGFAFVTMETLED 100

Query: 62  ANRCVKHL 69
           A RCVK+L
Sbjct: 101 AERCVKYL 108


>29751.m001798 FUS-interacting serine-arginine-rich protein 1
           (TLS-associated protein with Ser-Arg repeats)
           (TLS-associated protein with SR repeats) (TASR)
           (TLS-associated serine-arginine protein) (TLS-associated
           SR protein), putative
          Length = 399

 Score = 94.4 bits (233), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 43/68 (63%), Positives = 52/68 (76%)

Query: 2   DAINPGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVEA 61
           D  NPGN LYVTGLS R+T+RDLE+HF+ EGKV    LVV+P TR SRGF FVTM  +  
Sbjct: 41  DVENPGNNLYVTGLSPRITKRDLEKHFASEGKVIDVHLVVDPWTRESRGFGFVTMSTLVE 100

Query: 62  ANRCVKHL 69
           A+RC+K+L
Sbjct: 101 ADRCIKYL 108


>29154.m000213 cold-inducible RNA binding protein, putative
          Length = 94

 Score = 50.8 bits (120), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 39/67 (58%)

Query: 3  AINPGNTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVEAA 62
          AI  G+ L+V  LS   T + LE+ FS  G V    LV++PRT+  +GF FVT D+   A
Sbjct: 2  AIRLGSQLFVGRLSCYTTNQKLEKLFSPFGIVKEARLVLDPRTQKPKGFGFVTFDSESQA 61

Query: 63 NRCVKHL 69
           + +K +
Sbjct: 62 QKALKAM 68


>28462.m000127 glycine-rich RNA-binding protein, putative
          Length = 276

 Score = 48.1 bits (113), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 37/62 (59%)

Query: 8  NTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVEAANRCVK 67
          N ++V GLS  VTER LE  F++ GK+  C +++E  T   RGF F+T  +  + +  ++
Sbjct: 7  NRIFVGGLSWDVTERQLENAFNRYGKIVECQVMLERDTGRPRGFGFITFSDRRSMDDAIR 66

Query: 68 HL 69
           +
Sbjct: 67 EM 68


>29608.m000212 Heterogeneous nuclear ribonucleoprotein 27C, putative
          Length = 484

 Score = 46.2 bits (108), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 2/61 (3%)

Query: 6   PGNT--LYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVEAAN 63
           PG T  ++V GL++ VTE D  ++F + G +    ++ +  T+  RGF F+T D+ EA +
Sbjct: 103 PGRTRKIFVGGLASTVTETDFRKYFEQYGTITDVVVMYDHNTQRPRGFGFITYDSEEAVD 162

Query: 64  R 64
           +
Sbjct: 163 K 163


>29709.m001182 RNA binding protein, putative
          Length = 784

 Score = 45.8 bits (107), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 36/60 (60%)

Query: 10  LYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVEAANRCVKHL 69
           ++V GL    TE DL + F++ G+V    L++ P+T+ ++GFAF+    VE A + V  L
Sbjct: 215 VFVGGLDKDATEDDLRKVFTRVGEVTEVRLMMNPQTKKNKGFAFLRFSTVEQAKKAVTEL 274


>27613.m000635 Heterogeneous nuclear ribonucleoprotein 27C, putative
          Length = 478

 Score = 45.1 bits (105), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 2/61 (3%)

Query: 6   PGNT--LYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVEAAN 63
           PG T  ++V GL++ VT+ D +++F + G +    ++ +  T+  RGF F+T D+ +A +
Sbjct: 102 PGRTKKIFVGGLASTVTDNDFKKYFEQFGNITDVVVMYDHNTQRPRGFGFITYDSEDAVD 161

Query: 64  R 64
           R
Sbjct: 162 R 162


>30131.m007093 RNA-binding protein, putative
          Length = 916

 Score = 44.7 bits (104), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 31/60 (51%)

Query: 8  NTLYVTGLSTRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDNVEAANRCVK 67
          NT++V+      T   LEE FS  G +  CFLV +  +   RGF FV     E ANR ++
Sbjct: 23 NTVFVSNFPRSFTNSQLEETFSDVGPIRRCFLVTQKGSSEHRGFGFVQFAIKEDANRAIE 82