Jatropha Genome Database

JcCB0760911.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0760911.10 - phase: 0 /partial
         (68 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29593.m000174 conserved hypothetical protein                           91   1e-19
29726.m004014 nucleic acid binding protein, putative                   47   1e-06
30128.m009030 nucleic acid binding protein, putative                   47   2e-06

>29593.m000174 conserved hypothetical protein
          Length = 500

 Score = 90.9 bits (224), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/46 (86%), Positives = 44/46 (95%), Gaps = 2/46 (4%)

Query: 1   FYMKTGECKFGERCKFHHPINRSAP--TQAEQQAVKLTLAGLPRRE 44
           +YMKTGECKFGERC+FHHPI+RSAP  TQA+QQAVKLTLAGLPRRE
Sbjct: 399 YYMKTGECKFGERCRFHHPIDRSAPTATQAQQQAVKLTLAGLPRRE 444


>29726.m004014 nucleic acid binding protein, putative
          Length = 481

 Score = 47.4 bits (111), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/43 (51%), Positives = 27/43 (62%), Gaps = 4/43 (9%)

Query: 1   FYMKTGECKFGERCKFHHPINRSAPTQAEQQAVKLTLAGLPRR 43
           +YMKTG+CKFG  CK+HHP    AP    +  V L+  GLP R
Sbjct: 308 YYMKTGDCKFGSSCKYHHPPELIAP----KTNVVLSPMGLPLR 346


>30128.m009030 nucleic acid binding protein, putative
          Length = 448

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/43 (51%), Positives = 25/43 (58%), Gaps = 4/43 (9%)

Query: 1   FYMKTGECKFGERCKFHHPINRSAPTQAEQQAVKLTLAGLPRR 43
           FYMKTG+CKFG  C+FHHP  R  P         L+  GLP R
Sbjct: 316 FYMKTGDCKFGAVCRFHHPRERLIPA----PDCVLSPIGLPLR 354