Jatropha Genome Database

JcCB0750271.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0750271.10 + phase: 1 /partial
         (96 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29751.m001805 proliferating cell nuclear antigen, putative            165   5e-42

>29751.m001805 proliferating cell nuclear antigen, putative
          Length = 266

 Score =  165 bits (417), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 80/104 (76%), Positives = 88/104 (84%), Gaps = 8/104 (7%)

Query: 1   QDKISDFEMKLMDIDSEHLGIPEAEYHAIIRMPSAEFAKICRDLASIGDTVVISVSKEGV 60
           QDKISDFEMKLMDIDSEHLGIPEAEYHAI+RMPSAEFAKIC+DL SIGDTVVISV+KEGV
Sbjct: 108 QDKISDFEMKLMDIDSEHLGIPEAEYHAIVRMPSAEFAKICKDLGSIGDTVVISVTKEGV 167

Query: 61  KFSTRGDIGAANVVLRQNTTVDKVLSNNL--------LSFQLQY 96
           KFSTRGDIG AN+V+RQNTTVDK     +        L+F L+Y
Sbjct: 168 KFSTRGDIGTANIVVRQNTTVDKPEEATIIEMNEPVSLTFALRY 211