Jatropha Genome Database

JcCB0736441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0736441.10 - phase: 0 /partial
         (270 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29646.m001117 acyl-CoA oxidase, putative                              223   1e-58
29948.m000719 acyl-CoA oxidase, putative                              166   1e-41
28176.m000270 acyl-CoA dehydrogenase, putative                         54   9e-08
30346.m000023 acyl-CoA dehydrogenase, putative                         51   7e-07

>29646.m001117 acyl-CoA oxidase, putative
          Length = 625

 Score =  223 bits (567), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 115/244 (47%), Positives = 155/244 (63%), Gaps = 6/244 (2%)

Query: 14  SDMGVHAFIVPIRDINTHQTLPGIEIHDCGHKIGLNGVDNGALRFSSVRIPRDNLLNRFG 73
           ++ GVHAFI  IRD   +   P I I DCGHKIGLNGVDNG + F ++RIPR+NLLN   
Sbjct: 196 TNQGVHAFIAQIRDTEGN-ICPNIRIADCGHKIGLNGVDNGRIWFDNMRIPRENLLNSVA 254

Query: 74  DVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVAVLKLAGTIAIRYSLLRQQFG- 132
           DVS DG+Y S++   ++RFAA L  L  GRV +A S++   K++  IAIRYSL R+ F  
Sbjct: 255 DVSPDGQYLSAIKDPDQRFAAFLAPLTSGRVTIAVSAIYSSKISLAIAIRYSLTRRAFSI 314

Query: 133 PPKQPEVSILDYQSQQHKLMPMLASTYAFHFAAIHLVEKYSEMKKTHDEQLVGDVHALSA 192
            P +PEV +LDY S Q +L+P+LA TYA  FA   L   Y +     ++ L    H +S+
Sbjct: 315 RPNEPEVLLLDYPSHQRRLLPLLAKTYAMSFAGNSLKMIYWKRAPETNKTL----HVISS 370

Query: 193 GLKAYVTSYTAKSLSVCREACGGHGYAAVNRFGTLRNDHDIFQTFEGDNTVLLQQVAGDL 252
             KA +T +  ++L  CREACGG G    NR G L+++ D+  TFEGDN VL+QQV+  L
Sbjct: 371 AFKATMTWHNMRTLQECREACGGQGLKTENRVGNLKSEFDVQTTFEGDNNVLMQQVSKAL 430

Query: 253 LKQY 256
             ++
Sbjct: 431 FAEF 434


>29948.m000719 acyl-CoA oxidase, putative
          Length = 664

 Score =  166 bits (419), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 99/245 (40%), Positives = 139/245 (56%), Gaps = 11/245 (4%)

Query: 17  GVHAFIVPIRDINTHQTLPGIEIHDCGHKIG---LNGVDNGALRFSSVRIPRDNLLNRFG 73
           GVH FIV +R ++ H  LPGI + D G K G    N +DNG LRF  VRIPR+ +L R  
Sbjct: 200 GVHGFIVQLRSLDDHMPLPGITVGDIGMKFGSGAYNTMDNGVLRFDHVRIPRNQMLMRVM 259

Query: 74  DVSRDGKYTSSLPTINKRFAATLGELVGGRVGLAYSSVAVLKLAGTIAIRYSLLRQQFGP 133
            V+R+GK   S   + ++     G +V  R  +   + A L  A  IA RYS +R+QFG 
Sbjct: 260 QVTREGKCVQS--KVPRQL--IYGTMVYVRQTIVADASAALSRAVCIATRYSAVRRQFGS 315

Query: 134 PKQ-PEVSILDYQSQQHKLMPMLASTYAFHFAAIHLVEKYSEMKK---THDEQLVGDVHA 189
                E  ++DY++QQ +L P+LAS YAF F    L   Y+++ +    +D   + + HA
Sbjct: 316 NDGGVETQVIDYKTQQSRLFPLLASAYAFRFVGEWLKWLYTDVTQRLQANDFSTLPEAHA 375

Query: 190 LSAGLKAYVTSYTAKSLSVCREACGGHGYAAVNRFGTLRNDHDIFQTFEGDNTVLLQQVA 249
            +AGLK+  TS+TA ++  CR+ CGGHGY   +    L   +    T+EGDN VLL QVA
Sbjct: 376 CTAGLKSLTTSFTADAIEECRKLCGGHGYLTASGLPELFAVYVPACTYEGDNVVLLLQVA 435

Query: 250 GDLLK 254
             L+K
Sbjct: 436 RFLMK 440


>28176.m000270 acyl-CoA dehydrogenase, putative
          Length = 440

 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 81/205 (39%), Gaps = 32/205 (15%)

Query: 35  PGIEIHDCGHKIGLNGVDNGALRFSSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAA 94
           PG+      +KIGL  V NG +    V IP ++                 LP +N  F  
Sbjct: 238 PGLTATKIENKIGLRMVQNGDILLKQVFIPDED----------------RLPGVNS-FQD 280

Query: 95  TLGELVGGRVGLAYSSVAVLKLAGTIAIRYSLLRQQFGPPKQPEVSILDYQSQQHKLMPM 154
           T   L   RV +A+  + +      +  RY   R+QFG P      +  +Q  Q KL+ M
Sbjct: 281 TNKVLAVSRVMVAWQPIGISMGIYDMCHRYLKERKQFGAP------LAAFQINQQKLVQM 334

Query: 155 LASTYAFHFAAIHLVEKYSEMKKTHDEQLVGDVHALSAGLKAYVTSYTAKSLSVCREACG 214
           L +  A       L + Y   K T         HA  A  KA++TS   ++ +  RE  G
Sbjct: 335 LGNVQAMVLVGWRLCKLYETGKMTSG-------HASMA--KAWITSKARETAATGRELLG 385

Query: 215 GHGYAAVNRFGTLRNDHDIFQTFEG 239
           G+G  A         D +   T+EG
Sbjct: 386 GNGILADFLVAKAFCDLEPIYTYEG 410


>30346.m000023 acyl-CoA dehydrogenase, putative
          Length = 218

 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 82/201 (40%), Gaps = 32/201 (15%)

Query: 45  KIGLNGVDNGALRFSSVRIPRDNLLNRFGDVSRDGKYTSSLPTINKRFAATLGELVGGRV 104
           K+G    D   L F+ V+IP +NLL      + +G          + F   + +L   R+
Sbjct: 41  KLGHEAQDTSELFFNDVKIPTENLLG-----TEEG----------QGFFQLMAQLPQERL 85

Query: 105 GLAYSSVAVLKLAGTIAIRYSLLRQQFGPPKQPEVSILDYQSQQHKLMPMLASTYAFHFA 164
            +A   +A ++ A  + I Y   RQ FG P      I+ +Q+ Q  L             
Sbjct: 86  NIAVQGMATIERALELTIAYVKERQAFGKP------IIAFQNTQFVLAECKTEATVAKVF 139

Query: 165 AIHLVEKYSEMKKTHDEQLVGDVHALSAGL-KAYVTSYTAKSLSVCREACGGHGYAAVNR 223
             H +E++          L GD+ A +A + K +VT    K +  C +  GG+G+     
Sbjct: 140 VNHCIERH----------LKGDLDASTASMAKYWVTDLENKIVDRCLQLFGGYGFMNEYP 189

Query: 224 FGTLRNDHDIFQTFEGDNTVL 244
              +  D  + + + G N ++
Sbjct: 190 IARMYKDSRVQRIYGGTNEIM 210