Jatropha Genome Database

JcCB0735771.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0735771.10 + phase: 2 /TE/pseudo/partial
         (207 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30115.m001231 DNA polymerase alpha catalytic subunit, putative        369   e-103

>30115.m001231 DNA polymerase alpha catalytic subunit, putative
          Length = 1526

 Score =  369 bits (948), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 175/190 (92%), Positives = 185/190 (97%)

Query: 1   SPMLASEWKKPGMLSHFTVVRKLEGGIFPMGFSKEVTERNTNAGSNVLAIESSERALLNR 60
           +PMLASEWKKPGMLSHFTVVRKL+GGIFPMGFSKEVTERNT AGSNVL IESSERALLNR
Sbjct: 591 TPMLASEWKKPGMLSHFTVVRKLDGGIFPMGFSKEVTERNTQAGSNVLGIESSERALLNR 650

Query: 61  LMIALSKLDSDVLVGHNISGFDLDVLLHRAQACRVPSSMWSKIGRLKRSAMPKLTKGNSI 120
           LMIAL+KLDSDVLVGHNISGFDLDVLLHR+QACRVPSSMWSKIGRLKRS MPKLTKGN++
Sbjct: 651 LMIALNKLDSDVLVGHNISGFDLDVLLHRSQACRVPSSMWSKIGRLKRSIMPKLTKGNTM 710

Query: 121 FGSGASPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLTQLARTRLNKDRKEIAPHDIPGMF 180
           FGSGASPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLT+LARTRLNKDRKE+ PHDIP MF
Sbjct: 711 FGSGASPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLTELARTRLNKDRKEVTPHDIPRMF 770

Query: 181 QTSKSLIELV 190
           Q+SKSLIEL+
Sbjct: 771 QSSKSLIELI 780