Jatropha Genome Database

JcCB0733251.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0733251.10 + phase: 0 /pseudo/partial
         (164 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29631.m001003 DNA binding protein, putative                            51   3e-07
30190.m011218 transcription factor, putative                           47   3e-06
29822.m003351 DNA binding protein, putative                            47   4e-06

>29631.m001003 DNA binding protein, putative
          Length = 1794

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 20/105 (19%)

Query: 57  AEKSFENLLSRAEEIVEDFTPPSDTCNSDDTACQACGSRDRGDVMLICGDESGSIGCGIG 116
           A+K  E++L  A ++ +           D+  C+ CG     D +L+C        C  G
Sbjct: 895 AKKEMEDILEHASQMPK--------APWDEGVCKVCGVDKDDDNVLLCDK------CDSG 940

Query: 117 MHMDCFDPPLENIPEEDWFCPNCXXXXXXXXXA------KRRRKG 155
            H  C +PPL  IPE +W+CP+C                K+RR+G
Sbjct: 941 YHTYCLNPPLARIPEGNWYCPSCITQGASQVPQFVSHCRKKRRQG 985


>30190.m011218 transcription factor, putative
          Length = 1509

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 6/54 (11%)

Query: 86  DTACQACGSRDRGDVMLICGDESGSIGCGIGMHMDCFDPPLENIPEEDWFCPNC 139
           D  C+ C S   G+VML+C        C  G H+ C  PPL+ IP  +W+C  C
Sbjct: 249 DQICEQCRSGLHGEVMLLCDR------CNKGWHIYCLSPPLKQIPPGNWYCFEC 296


>29822.m003351 DNA binding protein, putative
          Length = 2145

 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%)

Query: 85   DDTACQACGSRDRGDVMLICGDESGSIGCGIGMHMDCFDPPLENIPEEDWFCPNC 139
            D+  C+ CG     D +L+C        C    H  C +PPL  IPE +W+CP+C
Sbjct: 1219 DEGVCKVCGFDKDDDSVLLCDT------CDAEYHTYCLNPPLARIPEGNWYCPSC 1267