Jatropha Genome Database

JcCB0704851.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0704851.10 + phase: 0 
         (78 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014183 ER lumen protein retaining receptor, putative           139   2e-34
29711.m000331 ER lumen protein retaining receptor, putative           134   7e-33
30120.m000373 ER lumen protein retaining receptor, putative            57   2e-09

>30170.m014183 ER lumen protein retaining receptor, putative
          Length = 221

 Score =  139 bits (351), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/75 (88%), Positives = 70/75 (93%)

Query: 1  MKASKRPIHAVATWIRRQPPKIKTFLAVVSGIVALVFLRMVVHDHDNLFVASEAVHAVGI 60
          MK +KRPIHAVATW+RRQPPK K  LAVVSG+ ALVFLRMVVHDHDNLFVA+EAVHAVGI
Sbjct: 1  MKGTKRPIHAVATWVRRQPPKAKAILAVVSGMAALVFLRMVVHDHDNLFVAAEAVHAVGI 60

Query: 61 SVLIYKLMKEKTCAG 75
          SVLIYKLMKEKTCAG
Sbjct: 61 SVLIYKLMKEKTCAG 75


>29711.m000331 ER lumen protein retaining receptor, putative
          Length = 272

 Score =  134 bits (338), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 60/75 (80%), Positives = 70/75 (93%)

Query: 1  MKASKRPIHAVATWIRRQPPKIKTFLAVVSGIVALVFLRMVVHDHDNLFVASEAVHAVGI 60
          M+A KRPIHAV+TW+RRQPPK+K FLAVV+G+ ALVFLR +VHDHDNLFVA+EAVH++GI
Sbjct: 1  MRAPKRPIHAVSTWVRRQPPKVKAFLAVVAGMAALVFLRFIVHDHDNLFVAAEAVHSIGI 60

Query: 61 SVLIYKLMKEKTCAG 75
           VLIYKLMKEKTCAG
Sbjct: 61 IVLIYKLMKEKTCAG 75


>30120.m000373 ER lumen protein retaining receptor, putative
          Length = 255

 Score = 56.6 bits (135), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 24/49 (48%), Positives = 36/49 (73%)

Query: 14 WIRRQPPKIKTFLAVVSGIVALVFLRMVVHDHDNLFVASEAVHAVGISV 62
          W+RRQ  K+KT L V+  +  LV L+ ++ DH++ FVASEA+HA G+S+
Sbjct: 15 WMRRQSVKVKTLLGVIVALGCLVGLKFMIKDHNHFFVASEAIHAAGLSL 63