Jatropha Genome Database

JcCB0703531.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0703531.10 - phase: 0 /partial
         (262 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29780.m001319 RNA-binding protein Nova-1, putative                    182   1e-46

>29780.m001319 RNA-binding protein Nova-1, putative
          Length = 544

 Score =  182 bits (462), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 132/281 (46%), Positives = 148/281 (52%), Gaps = 37/281 (13%)

Query: 1   KRIINQSGSSSYPLPVNPPS-NWAQPGQPVMQQQPHYGYAQPATQPMPSSYYGNYAQQQS 59
           KRII+ +GSSSY  P  P + NWAQPGQ  MQQ P YGYAQP  QP P +YYGNY QQ +
Sbjct: 254 KRIIDPTGSSSYGQPTYPATGNWAQPGQTPMQQ-PQYGYAQPGNQPTPPAYYGNYTQQPA 312

Query: 60  WDQSNPSTVSXXXXXXXXXXXXXXXXXXXSAPSYNYNQKTHVTSNTYDHSYSQQAPSYG- 118
           WDQSNP+T+S                   +  + +YNQ   V S+ Y +SYSQQ  +YG 
Sbjct: 313 WDQSNPTTMSQTQQMAGYGYYGQQPQMGSAPLNSSYNQTPPVASSGYGNSYSQQTSNYGQ 372

Query: 119 ---------------------SAAVSSQPDGAIXXXXXXXXXXXXXXXXXXVXXXXXXXX 157
                                SAAVSSQ DGAI                           
Sbjct: 373 NISSQTPTLEQQRPYATSNYGSAAVSSQSDGAISSQSTQAAPAYPPPAYNQQVADPQTYW 432

Query: 158 XXXX-------XXGYDQTGYSQIAYGGLQPVQFMPSSTQPVYGPGGYPLEPSPATANSVQ 210
                        GYDQTGYSQ  YG         SS QPVYG GGYPL+PSPA AN  Q
Sbjct: 433 TAAGYAGQPPPQTGYDQTGYSQAGYG------VSLSSNQPVYGQGGYPLQPSPAAANYAQ 486

Query: 211 GTHPLTYGQAQVETQPQSQQPNNGHSQSLAYGAETQDGNSN 251
           GT+PL YGQ Q+E QPQSQ  NNGHSQSLAYGAE  DGNSN
Sbjct: 487 GTNPLGYGQPQLEAQPQSQPSNNGHSQSLAYGAEIHDGNSN 527