Jatropha Genome Database

JcCB0701471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0701471.10 + phase: 0 /partial/short
         (30 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29701.m000599 protein binding protein, putative                        67   2e-12
29681.m001336 ubiquitin-protein ligase, putative                       64   2e-11
29851.m002394 protein binding protein, putative                        61   9e-11

>29701.m000599 protein binding protein, putative
          Length = 278

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/29 (96%), Positives = 28/29 (96%)

Query: 1  MRLSYSPAAQFFLFLVQWTDCHLAGALGF 29
          MRLSYSPAAQFFLFLVQWTDCHLAGALG 
Sbjct: 37 MRLSYSPAAQFFLFLVQWTDCHLAGALGL 65


>29681.m001336 ubiquitin-protein ligase, putative
          Length = 243

 Score = 63.5 bits (153), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/29 (93%), Positives = 27/29 (93%)

Query: 1  MRLSYSPAAQFFLFLVQWTDCHLAGALGF 29
          MRLSYS AAQFFLFLVQWTDCHLAGALG 
Sbjct: 38 MRLSYSQAAQFFLFLVQWTDCHLAGALGL 66


>29851.m002394 protein binding protein, putative
          Length = 247

 Score = 61.2 bits (147), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 25/29 (86%), Positives = 26/29 (89%)

Query: 1  MRLSYSPAAQFFLFLVQWTDCHLAGALGF 29
          MR+SYSPAA  FLFLVQWTDCHLAGALG 
Sbjct: 42 MRMSYSPAAHLFLFLVQWTDCHLAGALGL 70