Jatropha Genome Database

JcCB0698361.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0698361.10 - phase: 0 
         (134 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m013673 conserved hypothetical protein                          144   2e-35
29589.m001256 conserved hypothetical protein                           65   7e-12

>30170.m013673 conserved hypothetical protein
          Length = 617

 Score =  144 bits (362), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 89/141 (63%), Positives = 99/141 (70%), Gaps = 22/141 (15%)

Query: 1   MDFGVVGLEELVGSDNV------SSGFASLA---SSDRETKQELYGSGFLKQERSDTT-- 49
           MDFGVVG E LVGSD        SSGFASLA   SSD ETKQ+ YGSGFLKQERS TT  
Sbjct: 1   MDFGVVGFEGLVGSDTTTTTTTGSSGFASLAAAPSSDPETKQKWYGSGFLKQERSSTTTN 60

Query: 50  EHDWRSSKLSKTESMLLPQRN-TLLKSNTTD---GHRQQQMLSFSCPKSEGLTVERSPRN 105
           E DWRSSKLSKTESMLL  R+ TLLKSN T     + QQQMLSFSCPK E       P +
Sbjct: 61  EDDWRSSKLSKTESMLLSHRSTTLLKSNATSLFTDNGQQQMLSFSCPKPE-------PPS 113

Query: 106 ASFPSFHLSTSSAYNRRTGTL 126
           ++ P FHL++S+AYNR TG +
Sbjct: 114 STLPYFHLTSSAAYNRNTGYM 134


>29589.m001256 conserved hypothetical protein
          Length = 233

 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 56/115 (48%), Positives = 64/115 (55%), Gaps = 31/115 (26%)

Query: 12  VGSDNVSSGFASLASSDRETKQELYGSGFLKQERSDTTEH-DWRSSKLSKTESMLLPQRN 70
           VGSDN S    SLA SD   KQ+ Y SGF+KQERS  +E  D  S KL K    LLPQR+
Sbjct: 6   VGSDNTSISIDSLAGSD---KQDGYISGFVKQERSGISEEIDLSSFKLPK----LLPQRD 58

Query: 71  TLLKSNTTDGHRQQQMLSFSCPKSEGLT--VERSPRNASFPSFHLSTSSAYNRRT 123
           TLL                   KSE LT  VERS +NAS  +FHL  +SAY+R T
Sbjct: 59  TLL-------------------KSEDLTSVVERSSQNASSSAFHL--TSAYHRST 92