Jatropha Genome Database

JcCB0696171.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0696171.10 + phase: 0 /pseudo/partial
         (83 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29908.m006221 Vacuolar protein sorting-associated protein VPS9, ...   100   1e-22

>29908.m006221 Vacuolar protein sorting-associated protein VPS9,
           putative
          Length = 477

 Score =  100 bits (250), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/74 (64%), Positives = 52/74 (70%)

Query: 1   LAQKELQKINMYKAPRDKLVCILNCCKVXXXXXXXXXXXXXENPPGADEFLPVLIYVTIK 60
           LAQKELQKINMYKAPRDKLVCILNCCKV             ENPPGADEFLPV+IYVT+K
Sbjct: 138 LAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNENPPGADEFLPVVIYVTLK 197

Query: 61  VRSLNMNYLLSLLQ 74
                +N  L  +Q
Sbjct: 198 ANPPQLNSNLLYIQ 211