Jatropha Genome Database

JcCB0695691.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0695691.10 - phase: 1 /TE/partial
         (117 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008782 DNA polymerase zeta catalytic subunit, putative         138   4e-34

>30128.m008782 DNA polymerase zeta catalytic subunit, putative
          Length = 2066

 Score =  138 bits (348), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 60/67 (89%), Positives = 66/67 (98%)

Query: 51  RQYVHGCSLVRARKFYGYNSSEELFVKIYLYYPHDVSRAANLLLGGAVLDKSLKPHESHI 110
           RQ+VHGCSLVRARKFYGY+SSEELF KIYLYYPHDVSRAANLLLGGA+LDKSL+PHE+HI
Sbjct: 74  RQHVHGCSLVRARKFYGYHSSEELFFKIYLYYPHDVSRAANLLLGGAILDKSLQPHEAHI 133

Query: 111 PFILQFM 117
           PFILQF+
Sbjct: 134 PFILQFL 140