Jatropha Genome Database

JcCB0695521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0695521.10 - phase: 0 /pseudo/partial
         (154 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29851.m002398 conserved hypothetical protein                          144   2e-35

>29851.m002398 conserved hypothetical protein
          Length = 138

 Score =  144 bits (362), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 72/97 (74%), Positives = 79/97 (81%), Gaps = 3/97 (3%)

Query: 58  LSECNEICYKDPVFKDQQWSAYIDRSPGAASYSEECFHACVAGCGYKFEIEPDKVDQVRP 117
           LSECNEICYKDPVFKDQQWSAYIDRSPGAA YSEECFHACVAGCGY+FEIE +KVDQ+RP
Sbjct: 45  LSECNEICYKDPVFKDQQWSAYIDRSPGAARYSEECFHACVAGCGYRFEIEAEKVDQIRP 104

Query: 118 NRPSKPPPSVKPAHIQKPPPIASKPDEPAEDIPCTSA 154
           NRP K PP            +A+KP EP +D+PCTSA
Sbjct: 105 NRPCKLPPPPPAQKPPP---VATKPGEPTQDVPCTSA 138