Jatropha Genome Database

JcCB0693041.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0693041.10 + phase: 0 /pseudo/partial
         (271 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29646.m001077 ketol-acid reductoisomerase, chloroplast precursor...   335   1e-92
29900.m001612 ketol-acid reductoisomerase, chloroplast precursor...   330   3e-91

>29646.m001077 ketol-acid reductoisomerase, chloroplast precursor,
           putative
          Length = 584

 Score =  335 bits (859), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 164/185 (88%), Positives = 170/185 (91%)

Query: 87  VRGGRDLFKLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDITVKIGLRKGSRS 146
           VRGGRDLFKLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSL EAKSDI VKIGLRKGSRS
Sbjct: 95  VRGGRDLFKLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLGEAKSDIVVKIGLRKGSRS 154

Query: 147 FAEARAAGFTEENGTSGDIWETISGSDLVMLLISDAAQADNYEKIFSYMKPNSIXXXXXX 206
           FAEAR+AGFTEENGT GDIWET+SGSDLV+LLISDAAQADNYEK+FS+MKPNSI      
Sbjct: 155 FAEARSAGFTEENGTLGDIWETVSGSDLVLLLISDAAQADNYEKVFSHMKPNSILGLSHG 214

Query: 207 XXXXXXQSMGIDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRA 266
                 QSMG+DFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRA
Sbjct: 215 FLLGHLQSMGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRA 274

Query: 267 TDVAL 271
           TDVAL
Sbjct: 275 TDVAL 279


>29900.m001612 ketol-acid reductoisomerase, chloroplast precursor,
           putative
          Length = 594

 Score =  330 bits (847), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 163/185 (88%), Positives = 169/185 (91%)

Query: 87  VRGGRDLFKLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDITVKIGLRKGSRS 146
           VRGGRDLF LLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLA+AKSDI VKIGLRKGSRS
Sbjct: 105 VRGGRDLFPLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLADAKSDIVVKIGLRKGSRS 164

Query: 147 FAEARAAGFTEENGTSGDIWETISGSDLVMLLISDAAQADNYEKIFSYMKPNSIXXXXXX 206
           FAEARAAGFTEENGT GDIWETI+GSDLV+LLISDAAQADN EKIFS+MKPNSI      
Sbjct: 165 FAEARAAGFTEENGTLGDIWETIAGSDLVLLLISDAAQADNNEKIFSHMKPNSILGLSHG 224

Query: 207 XXXXXXQSMGIDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRA 266
                 QS+G+DFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRA
Sbjct: 225 FLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRA 284

Query: 267 TDVAL 271
           TDVAL
Sbjct: 285 TDVAL 289