Jatropha Genome Database

JcCB0689281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0689281.10 - phase: 0 /partial
         (267 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28448.m000363 electron transporter, putative                          299   1e-81
30131.m007206 electron transporter, putative                           99   3e-21
29822.m003499 electron transporter, putative                           95   3e-20
30068.m002590 electron transporter, putative                           63   1e-10
28629.m000546 conserved hypothetical protein                           61   5e-10
29852.m002032 electron transporter, putative                           60   8e-10
30068.m002512 electron transporter, putative                           59   3e-09

>28448.m000363 electron transporter, putative
          Length = 424

 Score =  299 bits (765), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 183/275 (66%), Positives = 202/275 (73%), Gaps = 22/275 (8%)

Query: 3   RALSLQTPLVHHPPSRKGDSHHXXXXXXXXXXXXXXI-EPITHPKFPDQTQSPQKSTINS 61
           RALSLQTPLVHHPPS+KGDSHH              I EP   P    Q QSP K T  +
Sbjct: 62  RALSLQTPLVHHPPSKKGDSHHLVSLTSTTYGSLLLINEP---PIKSSQPQSPPKFTKTT 118

Query: 62  NKTLIPADPGESLSPDSVINTWELMDGLDELDFEMGXXXXXXXXXXXDDYVLISPKSNSF 121
           ++T IPADPG S SPDSVINTWELMDGLD+                      ++ KS+SF
Sbjct: 119 HRTPIPADPGVSFSPDSVINTWELMDGLDDDLDFQNPKKPPLSDHQ------VNSKSSSF 172

Query: 122 HHLGFDESVKKLNDSFDFVKSEE--IEVDKSFS-LSKPLWKHLSEESFLSNMDPNVVSSY 178
            HLGFD+SVKK+ DS   VKSEE  I V+KSFS LSKPLWKHLSEES LSNMDPNVVSSY
Sbjct: 173 QHLGFDDSVKKVEDS---VKSEEESIVVEKSFSSLSKPLWKHLSEESLLSNMDPNVVSSY 229

Query: 179 RRALSSRQLGYTKESK-SIKSVGSSPIN--SSFKNGFIF---QDNKIVLYYTSLRGIRKT 232
           RRALSSRQLGYTKESK + +SVGSSP+N  S+ KNGF     +D+KIVLY+TSLRGIRKT
Sbjct: 230 RRALSSRQLGYTKESKCTARSVGSSPMNYSSAHKNGFFLHNTRDDKIVLYFTSLRGIRKT 289

Query: 233 YEDCCAVRMIFRGFRVPVDERDISMDSSYRKELQS 267
           YEDCCAVRMIFRGFRVPVDE+DISMDSSYRKELQS
Sbjct: 290 YEDCCAVRMIFRGFRVPVDEKDISMDSSYRKELQS 324


>30131.m007206 electron transporter, putative
          Length = 274

 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/91 (59%), Positives = 66/91 (72%), Gaps = 5/91 (5%)

Query: 182 LSSRQLGYTKESKSIKSVG--SSPINSSFKNGFI---FQDNKIVLYYTSLRGIRKTYEDC 236
           L+   L   K+ KS+KS+G   +  N  F N  I     +++IV+Y TSLRGIR+TYEDC
Sbjct: 75  LNESLLAQAKKLKSVKSMGPEYNRYNYGFNNSGIRLPGTEDRIVVYLTSLRGIRRTYEDC 134

Query: 237 CAVRMIFRGFRVPVDERDISMDSSYRKELQS 267
            AVRMIFRGFRV VDERDISMDS+Y+KELQS
Sbjct: 135 YAVRMIFRGFRVCVDERDISMDSAYKKELQS 165


>29822.m003499 electron transporter, putative
          Length = 441

 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 105/220 (47%), Gaps = 51/220 (23%)

Query: 63  KTLIPADPGESLSPDSVINTWELMDGLDELDFEMGXXXXXXXXXXXDDYVLISPKSNSFH 122
           KT I   PGE       INTWELM GL+E                 DD + +  +  SF 
Sbjct: 131 KTPIRTPPGEP----ETINTWELMAGLEE-----------------DDSLSVPHRYRSF- 168

Query: 123 HLGFD--------ESVKKLNDSFDFVKSEEIEVDKSFSLSKPLWKHLSEE---SFLSNMD 171
              FD        +   KLN +             S + +KP W  +++E   S     D
Sbjct: 169 --SFDVSRDPSPVQDSPKLNPTL-----------LSPNKNKPFWLQIADEDTNSKCPEFD 215

Query: 172 PNVVSSYRRALSSRQLGY-----TKESKSIKSVGSSPINSSFKNGFIFQDNKIVLYYTSL 226
           P V+S++R++L      +     + E+   +   S P N   K+       K+V+Y+TSL
Sbjct: 216 PQVISTFRKSLQELSPDHPFYLKSSENGEKQPPSSDPSNVVAKDYCKGGKEKLVVYFTSL 275

Query: 227 RGIRKTYEDCCAVRMIFRGFRVPVDERDISMDSSYRKELQ 266
           RG+RKTYEDCC VR+I +G  V VDERD+SM S +++EL+
Sbjct: 276 RGVRKTYEDCCHVRVILKGLGVRVDERDVSMHSGFKEELK 315


>30068.m002590 electron transporter, putative
          Length = 327

 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 38/51 (74%)

Query: 216 DNKIVLYYTSLRGIRKTYEDCCAVRMIFRGFRVPVDERDISMDSSYRKELQ 266
           D+K+V+Y TSLRGIR+T++ C  VR    GF V + ERD+SMD  +R+EL+
Sbjct: 163 DDKVVIYTTSLRGIRETFDACSVVRAAIGGFGVLICERDVSMDRGFREELR 213


>28629.m000546 conserved hypothetical protein
          Length = 427

 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 28/51 (54%), Positives = 37/51 (72%)

Query: 216 DNKIVLYYTSLRGIRKTYEDCCAVRMIFRGFRVPVDERDISMDSSYRKELQ 266
           +N +VLY T+LRGIRKT+EDC  VR I     + + ERDISMDS  ++EL+
Sbjct: 281 ENAVVLYTTTLRGIRKTFEDCNTVRSIIESHHIHMLERDISMDSGLKEELR 331


>29852.m002032 electron transporter, putative
          Length = 415

 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 24/47 (51%), Positives = 36/47 (76%)

Query: 219 IVLYYTSLRGIRKTYEDCCAVRMIFRGFRVPVDERDISMDSSYRKEL 265
           ++LY T+LRG+RKT+EDC ++R +   FRV   ERD+SM + Y++EL
Sbjct: 273 VILYTTTLRGVRKTFEDCNSIRFLLESFRVIFYERDVSMHTEYKEEL 319


>30068.m002512 electron transporter, putative
          Length = 376

 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 34/48 (70%)

Query: 219 IVLYYTSLRGIRKTYEDCCAVRMIFRGFRVPVDERDISMDSSYRKELQ 266
           +V+Y TSLRG+RKT+EDC  VR +  G RV  DERD+S+   +  EL+
Sbjct: 233 VVIYTTSLRGVRKTFEDCNRVRSLLEGHRVVFDERDVSLHGDFLNELR 280