Jatropha Genome Database

JcCB0687271.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0687271.10 - phase: 1 /partial
         (227 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29883.m001985 histone acetyltransferase gcn5, putative                237   3e-63

>29883.m001985 histone acetyltransferase gcn5, putative
          Length = 561

 Score =  237 bits (605), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 131/206 (63%), Positives = 135/206 (65%), Gaps = 5/206 (2%)

Query: 1   ESISARGAXXXXXXXXXXXXXXXXXXXXXXXXXMRTFTAARLQTNXXXXXXXXXXXXXXX 60
           ESISARGA                         MRTF AARL+TN               
Sbjct: 76  ESISARGADSDSDADDSDAVVDDDEDEFDNDSSMRTFNAARLETNAGASAPGGGSGGGGS 135

Query: 61  XXXRNTKLKAENSTVKIEKSDXXXXXXXXXXXXXXXXXXXSVPSLSKEDAVKIFTENLQT 120
              RNTK+K ENSTVKIEK D                       L+KEDAVKIFTENLQT
Sbjct: 136 SA-RNTKIKTENSTVKIEKLDGGKDGGTGAMGSITAGSSI----LAKEDAVKIFTENLQT 190

Query: 121 SGAYSAREENLKREEEAGRLKFVCLSNDGIDEHMVWLIGLKNIFARQLPNMPKEYIVRLV 180
           SGAYSAREE+LKREEEAGRLKFVCLSNDGID HMVWLIGLKNIFARQLPNMPKEYIVRLV
Sbjct: 191 SGAYSAREESLKREEEAGRLKFVCLSNDGIDAHMVWLIGLKNIFARQLPNMPKEYIVRLV 250

Query: 181 MDRSHKSVMVIRHNHVVGGITYRPYV 206
           MDRSHKSVMVIR NHVVGGITYRPYV
Sbjct: 251 MDRSHKSVMVIRRNHVVGGITYRPYV 276