Jatropha Genome Database

JcCB0669741.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0669741.10 - phase: 0 /partial
         (92 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29908.m006257 mads box protein, putative                              138   5e-34
29838.m001691 MADS-box transcription factor, putative                  99   3e-22
29913.m000156 hypothetical protein                                     50   2e-07
29596.m000699 mads box protein, putative                               45   6e-06

>29908.m006257 mads box protein, putative
          Length = 161

 Score =  138 bits (348), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 67/80 (83%), Positives = 76/80 (95%)

Query: 1  MKDIIARYNLHSNNIDKLGRPSLELQLENSNHARLSKEVAEKTHQLRQMRGEDLRGLNVE 60
          MK+ I RYNLHSNN+DKL +PSLELQLENSN+ RLSKEVA+KTHQLRQMRGEDL+GL++E
Sbjct: 1  MKETITRYNLHSNNLDKLDQPSLELQLENSNNIRLSKEVADKTHQLRQMRGEDLQGLSIE 60

Query: 61 ELQQLEKMLESGLTRVLETK 80
          ELQQLEKMLESGLTRVL+TK
Sbjct: 61 ELQQLEKMLESGLTRVLQTK 80


>29838.m001691 MADS-box transcription factor, putative
          Length = 184

 Score = 99.4 bits (246), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/77 (67%), Positives = 63/77 (81%), Gaps = 2/77 (2%)

Query: 4  IIARYNLHSNNIDKLGRPSLELQLENSNHARLSKEVAEKTHQLRQMRGEDLRGLNVEELQ 63
          +I R+NLH  N+ +L +PSLELQLEN     LSKEVAEKT +LRQMRGE+L+GL++EELQ
Sbjct: 25 VIERHNLHPRNLGRLDQPSLELQLENC--TALSKEVAEKTQELRQMRGEELQGLSMEELQ 82

Query: 64 QLEKMLESGLTRVLETK 80
          QLEK LE GL RV+ETK
Sbjct: 83 QLEKSLEGGLKRVMETK 99


>29913.m000156 hypothetical protein
          Length = 61

 Score = 50.1 bits (118), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/32 (75%), Positives = 29/32 (90%)

Query: 49 MRGEDLRGLNVEELQQLEKMLESGLTRVLETK 80
          MRGE+L+GLN+EELQQLEK LE+GL RV+E K
Sbjct: 1  MRGEELQGLNIEELQQLEKSLEAGLGRVIEKK 32


>29596.m000699 mads box protein, putative
          Length = 262

 Score = 45.4 bits (106), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 40/76 (52%)

Query: 1   MKDIIARYNLHSNNIDKLGRPSLELQLENSNHARLSKEVAEKTHQLRQMRGEDLRGLNVE 60
           MK II RYN      ++ G P  E++      A L +++       RQM GE+L GL+++
Sbjct: 62  MKSIIERYNKSKEENNQTGNPISEVKFWQREAAMLRQQLQNLQENHRQMMGEELSGLSIK 121

Query: 61  ELQQLEKMLESGLTRV 76
           ELQ LE  LE  L  V
Sbjct: 122 ELQNLEGRLEMSLRGV 137