Jatropha Genome Database

JcCB0652571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0652571.10 + phase: 1 /pseudo/partial
         (129 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29991.m000627 dtdp-glucose 4-6-dehydratase, putative                  181   8e-47

>29991.m000627 dtdp-glucose 4-6-dehydratase, putative
          Length = 373

 Score =  181 bits (459), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 86/96 (89%), Positives = 90/96 (93%)

Query: 1   LDVYNDKI*HLLEPETLTWADRIQFHRLNIKHDSRLEGLIKMSDLTINLAAICTPADYNT 60
           LDVYNDKI HLLEP++L WA RIQFHR+NIKHDSRLEGLIKM+DLTINLAAICTPADYNT
Sbjct: 45  LDVYNDKIKHLLEPDSLPWAGRIQFHRINIKHDSRLEGLIKMADLTINLAAICTPADYNT 104

Query: 61  RPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVY 96
           RPLDTIYSNFIDALPVVKYCSENNKRLIHFST   Y
Sbjct: 105 RPLDTIYSNFIDALPVVKYCSENNKRLIHFSTXXSY 140