Jatropha Genome Database

JcCB0647611.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0647611.10 + phase: 0 /partial
         (108 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28320.m001108 Protein AFR, putative                                   206   2e-54
29835.m000632 Protein AFR, putative                                   162   3e-41
29693.m001994 Protein AFR, putative                                    60   3e-10
28966.m000548 conserved hypothetical protein                           57   3e-09
30174.m009020 Protein AFR, putative                                    47   1e-06
29908.m005976 conserved hypothetical protein                           47   1e-06
29929.m004667 Protein AFR, putative                                    47   2e-06

>28320.m001108 Protein AFR, putative
          Length = 436

 Score =  206 bits (524), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 100/108 (92%), Positives = 105/108 (97%)

Query: 1   VDTTACLCRVDAGLKTVASAKKYVPGSKLCLQPDIKPSIHPTRSKPSRGDRSRNQSPLLP 60
           VDTTACLCRVDA LKTVA+AK+YVPGSKLCLQPDIKPSIHPTRSKPSRGDRSRNQSPLLP
Sbjct: 18  VDTTACLCRVDASLKTVANAKRYVPGSKLCLQPDIKPSIHPTRSKPSRGDRSRNQSPLLP 77

Query: 61  GLPDDLAIACLIRVPRIEHCKLRLVCKRWYRLLAGNFFYSHRRNLGIA 108
           GLPDDLAIACLIRVPR+EH KLRLVCKRWYRLLAGNFFYS R++LGIA
Sbjct: 78  GLPDDLAIACLIRVPRVEHRKLRLVCKRWYRLLAGNFFYSLRKSLGIA 125


>29835.m000632 Protein AFR, putative
          Length = 437

 Score =  162 bits (411), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 79/108 (73%), Positives = 93/108 (86%), Gaps = 2/108 (1%)

Query: 1   VDTTACLCRVDAGLKTVASAKKYVPGSKLCLQPDIKPSIHPTRSKPSRGDRSRNQSPLLP 60
           VD+ +C C+VD+GLKTVA A+K+VPGSKLC+QPDI P+ H  +SK  R +R+R Q PLLP
Sbjct: 22  VDSVSCYCKVDSGLKTVAEARKFVPGSKLCIQPDINPNAH--KSKNLRRERTRVQPPLLP 79

Query: 61  GLPDDLAIACLIRVPRIEHCKLRLVCKRWYRLLAGNFFYSHRRNLGIA 108
           GLPDDLAIACLIRVPR EH KLRLVCKRWYRLLAGNFFYS R++LG+A
Sbjct: 80  GLPDDLAIACLIRVPRAEHRKLRLVCKRWYRLLAGNFFYSLRKSLGMA 127


>29693.m001994 Protein AFR, putative
          Length = 465

 Score = 59.7 bits (143), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/52 (51%), Positives = 36/52 (69%), Gaps = 3/52 (5%)

Query: 57  PLLPGLPDDLAIACLIRVPRIEHCKLRLVCKRWYRLLAGN--FFYSHRRNLG 106
           P +PGLPDD+A+ CL+R+P   H   R VCKRW+ LL GN   F++ R+ LG
Sbjct: 111 PFIPGLPDDVALNCLLRLPVQSHASCRAVCKRWH-LLLGNKERFFTRRKELG 161


>28966.m000548 conserved hypothetical protein
          Length = 446

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 33/51 (64%)

Query: 58  LLPGLPDDLAIACLIRVPRIEHCKLRLVCKRWYRLLAGNFFYSHRRNLGIA 108
           L+PGLPD++A+ CL++VP   HC ++ VC  W  L++   FY  RR  G +
Sbjct: 22  LIPGLPDEIAMECLVKVPYQFHCNMKSVCHTWQDLISDPSFYQQRRKSGTS 72


>30174.m009020 Protein AFR, putative
          Length = 353

 Score = 47.4 bits (111), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%)

Query: 52  SRNQSPLLPGLPDDLAIACLIRVPRIEHCKLRLVCKRWYRLLAGNFFYSHR 102
              Q+ L+ GLPDD+ + CL RVPR  H  L+ VC+RW  L+    + ++R
Sbjct: 9   EEGQAQLIRGLPDDIVLFCLARVPRKYHTVLKCVCRRWRDLVCSEEWRAYR 59


>29908.m005976 conserved hypothetical protein
          Length = 471

 Score = 47.4 bits (111), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 4/58 (6%)

Query: 50  DRSRNQSPLLPGLPDDLAIACLIRVPRIEHCKLRLVCKRWYRLLAGNFFYSHRRNLGI 107
           DR R    L+P LPD+L+I  L ++PR  +  LRLV ++W   +  N  +  R+ LG+
Sbjct: 38  DRPR----LIPSLPDELSIQILAKIPRSYYFNLRLVSRKWKETIMSNELFKLRKELGL 91


>29929.m004667 Protein AFR, putative
          Length = 391

 Score = 46.6 bits (109), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 29/52 (55%)

Query: 56  SPLLPGLPDDLAIACLIRVPRIEHCKLRLVCKRWYRLLAGNFFYSHRRNLGI 107
           SP+LPGLPDD+A  CL  VPR     +  VCK+W   +    F   R+  G+
Sbjct: 53  SPILPGLPDDVAKYCLALVPRPYFPSMGAVCKKWRSFMKSKEFLVVRKLAGL 104