Jatropha Genome Database

JcCB0646891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0646891.10 - phase: 0 /partial
         (72 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29822.m003493 40S ribosomal protein S9, putative                      146   2e-36
30147.m014108 40S ribosomal protein S9, putative                      144   9e-36
29813.m001450 40S ribosomal protein S9, putative                      142   3e-35

>29822.m003493 40S ribosomal protein S9, putative
          Length = 196

 Score =  146 bits (368), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 72/72 (100%), Positives = 72/72 (100%)

Query: 1   EKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIH 60
           EKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIH
Sbjct: 66  EKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIH 125

Query: 61  HARVLIRQRHIR 72
           HARVLIRQRHIR
Sbjct: 126 HARVLIRQRHIR 137


>30147.m014108 40S ribosomal protein S9, putative
          Length = 197

 Score =  144 bits (363), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 71/72 (98%), Positives = 72/72 (100%)

Query: 1   EKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIH 60
           EKNPRRIFEGEALLRRMNRYGLL+ESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIH
Sbjct: 66  EKNPRRIFEGEALLRRMNRYGLLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIH 125

Query: 61  HARVLIRQRHIR 72
           HARVLIRQRHIR
Sbjct: 126 HARVLIRQRHIR 137


>29813.m001450 40S ribosomal protein S9, putative
          Length = 196

 Score =  142 bits (358), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/72 (98%), Positives = 71/72 (98%)

Query: 1   EKNPRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIH 60
           EKN RRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIH
Sbjct: 66  EKNQRRIFEGEALLRRMNRYGLLDESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIH 125

Query: 61  HARVLIRQRHIR 72
           HARVLIRQRHIR
Sbjct: 126 HARVLIRQRHIR 137