Jatropha Genome Database

JcCB0646291.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0646291.10 - phase: 0 /pseudo/partial
         (94 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014133 mads box protein, putative                               67   1e-12

>30147.m014133 mads box protein, putative
          Length = 213

 Score = 67.4 bits (163), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/53 (62%), Positives = 38/53 (71%), Gaps = 1/53 (1%)

Query: 42  LLEENASLREKCGEKKWPNPIEQKQAVKDLNLSD-KNSEVDTELFIGLPEMHC 93
           LLEEN  LREKC E  W +P ++K+    LN S  K SEV+TELFIGLPEMHC
Sbjct: 161 LLEENIRLREKCAENHWQHPTQRKEIKTYLNSSSKKKSEVETELFIGLPEMHC 213