Jatropha Genome Database

JcCB0645591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0645591.10 - phase: 0 /pseudo
         (95 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014167 5'->3' exoribonuclease, putative                        103   1e-23
30073.m002213 5'->3' exoribonuclease, putative                         90   2e-19
30128.m008637 5'->3' exoribonuclease, putative                         87   2e-18
30055.m001624 5'->3' exoribonuclease, putative                         78   1e-15

>30170.m014167 5'->3' exoribonuclease, putative
          Length = 1113

 Score =  103 bits (258), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 49/68 (72%), Positives = 50/68 (73%)

Query: 1  MGVPAFYRWLAEKYPLXXXXXXXXXXXXXXXXNIPVDTSRPNPNSIEYDNLYLDMNGIIH 60
          MGVPAFYRWLAEKYPL                 IPVD SRPNPN+IEYDNLYLDMNGIIH
Sbjct: 1  MGVPAFYRWLAEKYPLVVVDAIEEEPVVIDGVKIPVDASRPNPNNIEYDNLYLDMNGIIH 60

Query: 61 PCFHPEDR 68
          PCFHPEDR
Sbjct: 61 PCFHPEDR 68


>30073.m002213 5'->3' exoribonuclease, putative
          Length = 1545

 Score = 90.1 bits (222), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/67 (55%), Positives = 45/67 (67%)

Query: 1  MGVPAFYRWLAEKYPLXXXXXXXXXXXXXXXXNIPVDTSRPNPNSIEYDNLYLDMNGIIH 60
          MG+P+FY+WL EKYP                  +P++T+ PNPN IE+DNLYLDMNGIIH
Sbjct: 1  MGIPSFYKWLTEKYPDTVVDVIEARRRMGNGVLLPINTALPNPNGIEFDNLYLDMNGIIH 60

Query: 61 PCFHPED 67
          PCFHP D
Sbjct: 61 PCFHPSD 67


>30128.m008637 5'->3' exoribonuclease, putative
          Length = 964

 Score = 86.7 bits (213), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/69 (57%), Positives = 48/69 (69%), Gaps = 1/69 (1%)

Query: 1  MGVPAFYRWLAEKYPLXXXXXXXXXXXXXXXXNI-PVDTSRPNPNSIEYDNLYLDMNGII 59
          MGVPAFYRWLA++YPL                 I P+D S+PNPN +E+DNLYLDMNGII
Sbjct: 1  MGVPAFYRWLADRYPLAIVDVVEEEPKEDSNGVIGPIDISKPNPNGLEFDNLYLDMNGII 60

Query: 60 HPCFHPEDR 68
          HPCFHP+ +
Sbjct: 61 HPCFHPDGK 69


>30055.m001624 5'->3' exoribonuclease, putative
          Length = 993

 Score = 77.8 bits (190), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/67 (53%), Positives = 42/67 (62%), Gaps = 20/67 (29%)

Query: 1  MGVPAFYRWLAEKYPLXXXXXXXXXXXXXXXXNIPVDTSRPNPNSIEYDNLYLDMNGIIH 60
          MGVPAFY+WL  KYP                 N+    + PNPN +E+DNLYLDMNGIIH
Sbjct: 1  MGVPAFYKWLVNKYP-----------------NV---ITSPNPNGLEFDNLYLDMNGIIH 40

Query: 61 PCFHPED 67
          PCFHP+D
Sbjct: 41 PCFHPDD 47