Jatropha Genome Database

JcCB0644471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0644471.10 + phase: 0 /TE/partial
         (639 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28752.m000330 conserved hypothetical protein                           51   2e-06

>28752.m000330 conserved hypothetical protein
          Length = 317

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 93  NSMLVSWVFHTIEPTLRSTISHMENVSDLWEDIKQRFS-VGNGPRVQQVRSDLANCKQDG 151
           + +++SW+ ++IEP +    S+  +  DLW  +K+ F  + N  RV Q++ DL++ +Q  
Sbjct: 39  DQLVISWLLNSIEPKVSEIFSYSTSSFDLWIAVKEMFGDMNNAARVFQLKKDLSDLRQSS 98

Query: 152 QAIVTYYSRLKTIWDELNNYDKY 174
           ++ V      K  W+EL+ Y  Y
Sbjct: 99  RSFVQLLGLFKAKWNELDLYRLY 121