Jatropha Genome Database

JcCB0638431.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0638431.10 + phase: 2 /partial
         (161 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29726.m003989 conserved hypothetical protein                          240   2e-64

>29726.m003989 conserved hypothetical protein
          Length = 287

 Score =  240 bits (612), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 119/148 (80%), Positives = 123/148 (83%), Gaps = 19/148 (12%)

Query: 1   EAALSWNGEGSFLFTSSSAPYDCNDNGECDEDSPAVPIGRSPRTDVLLNAEKVVLESNGC 60
           EAALSWNGEGSFLFTSSSAPYDC DNG+CDEDSP VPIGRSPRTDVLL AEKVVLES+GC
Sbjct: 110 EAALSWNGEGSFLFTSSSAPYDCYDNGDCDEDSPVVPIGRSPRTDVLLKAEKVVLESDGC 169

Query: 61  ADSLGFDISSVISKTLINWPYKADRGAHVYWLEKGTVEVRPDHILNLIHYEDAASLSIAI 120
                               YKADRGAHVYWL+KG VEVRPDHILNLIHYEDAASLSIAI
Sbjct: 170 V-------------------YKADRGAHVYWLQKGIVEVRPDHILNLIHYEDAASLSIAI 210

Query: 121 LKKKFRGQIFLGCDNHPLSRQEVMDLVA 148
           LKKKF G+IFLGCDNHPLSRQEVMDLVA
Sbjct: 211 LKKKFHGRIFLGCDNHPLSRQEVMDLVA 238