Jatropha Genome Database

JcCB0635861.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0635861.10 - phase: 1 /partial
         (323 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29738.m000999 RNA binding protein, putative                           501   e-142

>29738.m000999 RNA binding protein, putative
          Length = 1744

 Score =  501 bits (1289), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 248/322 (77%), Positives = 279/322 (86%), Gaps = 3/322 (0%)

Query: 1   SWGVLEATLVPFFLRSAGLSVGMSQNEESDIFEWDQYSVLQGLDGMIDNLNLDKEFILSL 60
           SW VLEATLVPFFLRSAGL++ M QNEESDIFEW Q+SVL  L G+ID+ NLDKEF+LSL
Sbjct: 123 SWDVLEATLVPFFLRSAGLAMDMLQNEESDIFEWAQHSVL--LSGLIDDSNLDKEFMLSL 180

Query: 61  SGSFPLSISCHVLTLILDSALQSFQAASTTESMLENDSCYADQLFSKLLWDLCNMSERLF 120
           SGSFPL ISCHVL +ILDS LQS  AAS TESM+EN S YA +LF KLLWDLCNMSERL 
Sbjct: 181 SGSFPLPISCHVLAIILDSTLQSCNAASRTESMVENGSSYAQKLFYKLLWDLCNMSERLL 240

Query: 121 SRSLEHRSCAISFLLPVDEESLVRKQSLHILKRVLQISEEGQRNSFVPEKKSREKHSVPH 180
            +SLEHRSCA  FLLPVD ESLVRKQSLHILKRVLQ+    Q NS   EKKS+EK+S+P+
Sbjct: 241 LQSLEHRSCATGFLLPVDAESLVRKQSLHILKRVLQLGAGTQSNSPNTEKKSQEKYSIPN 300

Query: 181 GMTKREMWANKEAKSLGVGEICSSIDSPLDIQQQWEAFILQYEMLEEYGTHLVEAAWDHQ 240
           GMTKR +WA+KEAKSLGVG++C+S+DSPLD +QQWEAFIL YEMLEEYGTHLVEAAW+HQ
Sbjct: 301 GMTKRAIWADKEAKSLGVGKLCNSMDSPLDGRQQWEAFILLYEMLEEYGTHLVEAAWEHQ 360

Query: 241 ITLLLQFSVSRDNFASSICGRVCQSEVEDLGEVFTWLTILWQLGFRHDNPQVRCLIMQSF 300
           +TLLLQFSVS DNFA+SICG + Q++   LGEVF+WLTILWQLGFRHDNPQVRCLIMQSF
Sbjct: 361 VTLLLQFSVSYDNFANSICG-IQQNQTAVLGEVFSWLTILWQLGFRHDNPQVRCLIMQSF 419

Query: 301 LGIEWMEYGDAAKSVQRSFVLG 322
           LGIEWM+Y DAAKSV  SF+LG
Sbjct: 420 LGIEWMKYHDAAKSVPESFILG 441