Jatropha Genome Database

JcCB0631101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0631101.10 + phase: 0 /pseudo
         (129 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m013900 nucleic acid binding protein, putative                   92   5e-20

>30147.m013900 nucleic acid binding protein, putative
          Length = 417

 Score = 92.4 bits (228), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 38/50 (76%), Positives = 47/50 (94%)

Query: 53  DDCSFIWDETSQLYFHSRSGIYHDPNGGWYYSSRDGLYYKFENGSYVLLE 102
           ++CSF+WD+++QLYFH+ SG YHDP+ GWY+SSRDGLYYKFENGSYVLLE
Sbjct: 15  NNCSFVWDDSTQLYFHASSGFYHDPSAGWYFSSRDGLYYKFENGSYVLLE 64