Jatropha Genome Database

JcCB0627221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0627221.10 - phase: 2 /partial
         (298 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29576.m000233 transcription factor, putative                          465   e-132
29576.m000226 transcription factor, putative                          446   e-126
30169.m006420 transcription factor, putative                          236   1e-62
29815.m000502 conserved hypothetical protein                          188   3e-48

>29576.m000233 transcription factor, putative
          Length = 441

 Score =  465 bits (1197), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/299 (76%), Positives = 246/299 (82%), Gaps = 1/299 (0%)

Query: 1   GKKGSPWQRVKWTDKMVRLLITAVSYIGEDVTSDCGGGMRRKFAVLQKKGKWKSVSKVMA 60
           GKKGSPWQRVKWTDKMVRLLITAVSYIGEDVTSD G GMRRKF+VLQKKGKWKSVSKVMA
Sbjct: 106 GKKGSPWQRVKWTDKMVRLLITAVSYIGEDVTSDYGSGMRRKFSVLQKKGKWKSVSKVMA 165

Query: 61  ERGHHVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVENPALLEYID-LSEKEKEDVRK 119
           ERGH VSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVENPALL+ ID L+EKEK+DVRK
Sbjct: 166 ERGHLVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVENPALLDVIDYLTEKEKDDVRK 225

Query: 120 ILSSKHLFYEEMCSYHNANRLHLPHDPALQRSLQLALRSKXXXXXXXXXXXXXXXXXXXX 179
           ILSSKHLFYEEMCSYHN NRLHLPHDPALQRSLQLALRSK                    
Sbjct: 226 ILSSKHLFYEEMCSYHNGNRLHLPHDPALQRSLQLALRSKDGHDNDDVRRHQHDDMDEDD 285

Query: 180 XXXXXXXXXXFEENHPSRGDSKGFYGALGGSMKRLRPGLGHEDACFGNSSQDGNKGSYSH 239
                     F E   S G+S+G +G LGGS KRLR G GHED CF NSSQDGNKGS+S+
Sbjct: 286 QEVETDDHDEFAETQASHGESRGIHGLLGGSAKRLRQGQGHEDVCFVNSSQDGNKGSHSN 345

Query: 240 VQIPQVDMNQISPESSRAAWLQKQWMESRSLQLEEQKVQIQLEMLELEKQRFKWKRFSR 298
            QI +VDMNQ SPE ++AAWLQKQWMESR+LQLEEQK+QIQ+E LELEKQRFKW+RFSR
Sbjct: 346 FQISEVDMNQNSPECTKAAWLQKQWMESRALQLEEQKLQIQIETLELEKQRFKWQRFSR 404


>29576.m000226 transcription factor, putative
          Length = 445

 Score =  446 bits (1147), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 223/299 (74%), Positives = 240/299 (80%), Gaps = 1/299 (0%)

Query: 1   GKKGSPWQRVKWTDKMVRLLITAVSYIGEDVTSDCGGGMRRKFAVLQKKGKWKSVSKVMA 60
           GKKGSPW+RVKWTDKMVRLLITAVSYIGED++SDC GG+RRKFAVLQ+KGKWK VSK MA
Sbjct: 110 GKKGSPWRRVKWTDKMVRLLITAVSYIGEDMSSDCNGGIRRKFAVLQRKGKWKLVSKAMA 169

Query: 61  ERGHHVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVENPALLEYID-LSEKEKEDVRK 119
           ERG HVSPQQCEDKFNDLNKRYK+LND+LGRGTSCQVVENPALL+ ID L+EK K+DVRK
Sbjct: 170 ERGFHVSPQQCEDKFNDLNKRYKRLNDILGRGTSCQVVENPALLDVIDFLTEKAKDDVRK 229

Query: 120 ILSSKHLFYEEMCSYHNANRLHLPHDPALQRSLQLALRSKXXXXXXXXXXXXXXXXXXXX 179
           ILSSKHLFYEEMCSYHN NRLHLPHDPALQ SLQLALR K                    
Sbjct: 230 ILSSKHLFYEEMCSYHNDNRLHLPHDPALQHSLQLALRRKEDHDNDDMRRNQHDDLEEDD 289

Query: 180 XXXXXXXXXXFEENHPSRGDSKGFYGALGGSMKRLRPGLGHEDACFGNSSQDGNKGSYSH 239
                      E+N  SR D KG  GALGGSMKR R   GH DACF  SSQD  KGSYSH
Sbjct: 290 QEVETEDRDEVEDNLISRRDGKGIDGALGGSMKRFRHAQGHVDACFRISSQDNVKGSYSH 349

Query: 240 VQIPQVDMNQISPESSRAAWLQKQWMESRSLQLEEQKVQIQLEMLELEKQRFKWKRFSR 298
           +QIPQVD+NQ+S ES+RAA LQKQWMES +LQLEEQK+QIQLEMLELEKQRFKWKRFSR
Sbjct: 350 LQIPQVDINQMSSESTRAALLQKQWMESCTLQLEEQKLQIQLEMLELEKQRFKWKRFSR 408


>30169.m006420 transcription factor, putative
          Length = 454

 Score =  236 bits (602), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 138/296 (46%), Positives = 173/296 (58%), Gaps = 23/296 (7%)

Query: 2   KKGSPWQRVKWTDKMVRLLITAVSYIGEDVTSDCGGGMRRKFAVLQKKGKWKSVSKVMAE 61
           KKGSPWQR+KWTD +VRLLI  V+ +G+D   D   G++RK  +LQKKGKWK+VSK++  
Sbjct: 114 KKGSPWQRMKWTDNVVRLLIAVVACVGDDGAFDGVEGLKRKSGILQKKGKWKTVSKILIS 173

Query: 62  RGHHVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVENPALLEYIDLSEKEKEDVRKIL 121
           +G HVSPQQ EDKFNDLNKRYK+LND+LGRGTSC+VVENPAL++ + LS K KEDVRKIL
Sbjct: 174 KGCHVSPQQSEDKFNDLNKRYKRLNDILGRGTSCRVVENPALMDSMPLSAKAKEDVRKIL 233

Query: 122 SSKHLFYEEMCSYHNANRLHLPHDPALQRSLQLAL-RSKXXXXXXXXXXXXXXXXXXXXX 180
           SSKHLFY+EMC+YHN   +    D  LQ    L L R                       
Sbjct: 234 SSKHLFYKEMCAYHNGQMIPNCQDLDLQ-GFSLPLERCSRDNNGSEEEEAEGHDDSDEDE 292

Query: 181 XXXXXXXXXFEENHPSRGDSKGFYGALGGSMKRLRPGLGHEDACFGNSSQDGNKGSYSHV 240
                     EE     G+  G Y          R  +  EDA      Q G   S+   
Sbjct: 293 SDNEDDNNAIEE-----GERMGMYAE--------RNKVNEEDAHLW--PQSGGCNSF--- 334

Query: 241 QIPQVDMNQISPESSRAAWLQKQWMESRSLQLEEQKVQIQLEMLELEKQRFKWKRF 296
              +V+M  I  + S + W +K+W+  + LQL EQ+V IQ +  ELEKQRFKW R+
Sbjct: 335 ---EVEMAGIFQDPSVSLWEKKEWINKQKLQLLEQRVSIQAQAFELEKQRFKWLRY 387


>29815.m000502 conserved hypothetical protein
          Length = 499

 Score =  188 bits (477), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 90/141 (63%), Positives = 114/141 (80%), Gaps = 5/141 (3%)

Query: 2   KKGSPWQRVKWTDKMVRLLITAVSYIGEDVTS----DCGGGMRRKFAVL-QKKGKWKSVS 56
           +K SPWQR+KWTD MVRLLI AV YIG++  S    D   G ++    L QKKGKWKSVS
Sbjct: 106 RKVSPWQRMKWTDSMVRLLIMAVFYIGDEAGSEGNNDPSTGKKKAGGGLSQKKGKWKSVS 165

Query: 57  KVMAERGHHVSPQQCEDKFNDLNKRYKKLNDMLGRGTSCQVVENPALLEYIDLSEKEKED 116
           + M E+G +VSPQQCEDKFNDLNKRYK++ND+LG+GT+C+VVEN +LLE +DLS K KE+
Sbjct: 166 RAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACKVVENQSLLETMDLSPKMKEE 225

Query: 117 VRKILSSKHLFYEEMCSYHNA 137
           V+K+L+SKHLF+ EMC+YHN+
Sbjct: 226 VKKLLNSKHLFFREMCAYHNS 246



 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 33/45 (73%)

Query: 253 ESSRAAWLQKQWMESRSLQLEEQKVQIQLEMLELEKQRFKWKRFS 297
           + +++ W +K WM+ RS+QLEEQ++  Q +  ELEKQR KW +FS
Sbjct: 390 DGAKSPWEKKHWMKLRSMQLEEQQLSYQCQAFELEKQRLKWVKFS 434