Jatropha Genome Database

JcCB0615491.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0615491.10 + phase: 0 /pseudo/partial
         (295 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30169.m006480 hypothetical protein                                    347   5e-96
29991.m000631 DNA binding protein, putative                            93   2e-19

>30169.m006480 hypothetical protein
          Length = 1915

 Score =  347 bits (889), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 180/261 (68%), Positives = 208/261 (79%), Gaps = 1/261 (0%)

Query: 2    YLNFYSFGHIASSVAEELMRKTSDKAIEDPIKSDEEIISAQMKIISKKTAKFRWPNIPRL 61
            YLN+Y+FGHIASSVAE+L+ K+SDK IED IKS+EEIISAQMKI+SK+  KF W +IPRL
Sbjct: 1010 YLNYYNFGHIASSVAEDLLHKSSDKTIEDSIKSEEEIISAQMKILSKRCPKFHWSSIPRL 1069

Query: 62   NANVHKEKCGWCYCCRVSSDDLGCLFNVCLGPVQA-GSVDEVVGLQSKRNKKADFTDLIS 120
            N +V KEKCGWC+ CR SSDD GCLFN+ L  V   GS  E  GLQ+K NKK   TD+IS
Sbjct: 1070 NVDVQKEKCGWCFSCRASSDDPGCLFNMTLSSVGGEGSAIESAGLQAKGNKKGHLTDIIS 1129

Query: 121  YXXXXXXXXXXXXXXPWLNPHYSKLWCKSVLRASDIVSVKSLLLTLESNLHRLALSAEWL 180
            +              PWLNP+YSKLW KSVL+ASDIVS+K LLLTLESNL RLALSAEWL
Sbjct: 1130 HVLVIEDRLQGLLLGPWLNPNYSKLWRKSVLKASDIVSLKHLLLTLESNLSRLALSAEWL 1189

Query: 181  KYVDSAATMGSASHIVIASSRASSKNGIGRKRARYSELDSNPSLNSASGLGMLWWRGGRI 240
            K+VDS+  MGSASHIV+AS RASSKNGI +KRAR+SE DSNPS NS+SGL MLWWRGGR+
Sbjct: 1190 KHVDSSPRMGSASHIVMASLRASSKNGISKKRARFSEFDSNPSSNSSSGLSMLWWRGGRL 1249

Query: 241  SRRLFSWKILPSSLVSKAARR 261
            SR+LFSWK+LP SL SK AR+
Sbjct: 1250 SRQLFSWKVLPHSLASKGARQ 1270


>29991.m000631 DNA binding protein, putative
          Length = 1723

 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 106/238 (44%), Gaps = 2/238 (0%)

Query: 42  QMKIISKKTAKFRWPNIPRLNANVHKEKCGWCYCCRVSSDD-LGCLFNVCLGPVQAGSVD 100
           Q+K  S   ++F WP+  +    V +E+CGWC+ C++ S++  GC+ N        G++ 
Sbjct: 673 QIKAFSAAASRFFWPSSEKKLIEVPRERCGWCHSCKLPSNNRRGCMLNSAALTATKGAMK 732

Query: 101 EVVGLQSKRNKKADFTDLISYXXXXXXXXXXXXXXPWLNPHYSKLWCKSVLRASDIVSVK 160
            +  L+   + +     + +Y               ++N  Y + W K V  AS   ++ 
Sbjct: 733 ILNSLRPVTSGEGSLLSISTYILYLGESLCGLTVGSFVNASYREQWRKRVENASSCSAIM 792

Query: 161 SLLLTLESNLHRLALSAEWLKYVDSAATMGSASHIVIASSRASSKNGIGRKRARYSELDS 220
             LL LE N+  +A   +W K +D          I  ++   + ++G G KR R      
Sbjct: 793 GPLLELEENIRTIAFLGDWTKAMDVLLVDSPMIQIAASNGGITQRSGPGGKRHRKQSGVP 852

Query: 221 NPSLNSASGLGMLWWRGGRISRRLFSWKILPSSLVSKAARR-GLXSFFSVFYMNSGRI 277
           +   NS      +WWRG +  + +F   ILP  +V +AAR+ G      VFY++   +
Sbjct: 853 DFRANSNDDKSFVWWRGEKQLKLVFQQAILPRLVVKRAARQGGSKKIMGVFYVDDPEL 910