Jatropha Genome Database

JcCB0611681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0611681.10 - phase: 1 /pseudo/partial
         (125 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29794.m003344 protein phosphatase pp2a regulatory subunit B, put...   112   4e-26
29333.m001046 conserved hypothetical protein                           71   1e-13
30147.m013921 protein phosphatase pp2a regulatory subunit B, put...    68   1e-12

>29794.m003344 protein phosphatase pp2a regulatory subunit B,
           putative
          Length = 513

 Score =  112 bits (280), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 60/117 (51%), Positives = 75/117 (64%), Gaps = 2/117 (1%)

Query: 10  FHMYLSQFDYLKSLKIEEKINKIRWCQTANGALFLLSTNDKTIXXXXXXXXXXXXISDMN 69
           F  +  +FDYL+SL+IEEKINKIRWCQ+ANGALFLLSTNDKTI            + +MN
Sbjct: 98  FQSHEPEFDYLRSLEIEEKINKIRWCQSANGALFLLSTNDKTIKFWKVQEKKVKKVCNMN 157

Query: 70  VDPSKALGNGXXX-XXXXXXXXKPYIANGGWPEKSYSCPSNDFTFPPGGIPSLRLPV 125
           VDP+K  GNG              YIANGG+ ++S +  SNDF+F  G + +L LPV
Sbjct: 158 VDPAKTTGNGPIVGAASMSTSPNMYIANGGYLDRSSNHSSNDFSF-SGDVQNLHLPV 213


>29333.m001046 conserved hypothetical protein
          Length = 105

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/49 (67%), Positives = 35/49 (71%)

Query: 77  GNGXXXXXXXXXXXKPYIANGGWPEKSYSCPSNDFTFPPGGIPSLRLPV 125
           GNG           KP++ANGGWPEKSYSCPSNDFT PPGGI SLR PV
Sbjct: 44  GNGSVASSSNSSSAKPHLANGGWPEKSYSCPSNDFTVPPGGISSLRFPV 92


>30147.m013921 protein phosphatase pp2a regulatory subunit B,
           putative
          Length = 506

 Score = 68.2 bits (165), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 30/43 (69%), Positives = 37/43 (86%)

Query: 10  FHMYLSQFDYLKSLKIEEKINKIRWCQTANGALFLLSTNDKTI 52
           F  +  +FDYLKSL+IEEKIN+I+WC T NG+LF+LSTNDKTI
Sbjct: 98  FQSHEPEFDYLKSLEIEEKINRIKWCATPNGSLFILSTNDKTI 140