Jatropha Genome Database

JcCB0607681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0607681.10 - phase: 0 /pseudo/partial
         (246 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m013829 conserved hypothetical protein                          259   8e-70
29883.m002045 conserved hypothetical protein                           74   6e-14

>30170.m013829 conserved hypothetical protein
          Length = 369

 Score =  259 bits (662), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 134/197 (68%), Positives = 152/197 (77%), Gaps = 7/197 (3%)

Query: 25  QTIAIIAVREGIIQLGSFDKIAEDLNLVINVQRKFSYLQSIPGVFAMQRPYLPIQHPYIL 84
           QTIAII+VREGIIQLGSFDKIAEDLNLVINVQRKFSYLQSIPGVFA+QRPYLPIQHPYIL
Sbjct: 160 QTIAIISVREGIIQLGSFDKIAEDLNLVINVQRKFSYLQSIPGVFAIQRPYLPIQHPYIL 219

Query: 85  KPNTRTIESEEIGFSVDD-KRQITGVKRLFDESFDDSPLKSINLGLNSPQNGITGPPIWS 143
           KPNTR +ES+E  FS+DD K QI   KRLFDE FDD+P+KSI+LG N+PQNGI G PIWS
Sbjct: 220 KPNTRMVESQETTFSIDDNKHQIIREKRLFDERFDDNPIKSISLGWNNPQNGIAGAPIWS 279

Query: 144 IPPLLPTMSCSLGALLSRLPSVIPSYGTTIQALDXXXXXXXXXXXXXQRAKAENFGHL-- 201
           IP LLPTMSCSLGALLS+LPSV+PS   +I+A D             Q +K +  G    
Sbjct: 280 IPTLLPTMSCSLGALLSKLPSVVPSSCGSIEAFDTALVNCNNSNRRSQSSKVDTCGLARE 339

Query: 202 ---ASTKVES-SCQLDG 214
              ++  +ES SCQLD 
Sbjct: 340 VPPSNRNLESCSCQLDA 356


>29883.m002045 conserved hypothetical protein
          Length = 366

 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 41/147 (27%)

Query: 25  QTIAIIAVREGIIQLGSFDKIAEDLNLVINVQRKFSYLQSIPGVFAMQRPYLPIQHPYIL 84
           +TIA+IAVREG++QLG+  K+ EDL+ V+ +++KFSY++SIPGV       LP       
Sbjct: 170 KTIALIAVREGVVQLGAVHKVIEDLSYVVLLRKKFSYIESIPGVL------LP------- 216

Query: 85  KPNTRTIESEEIGFSVDDKRQITGV----KRLFDESFDDSPLKSINLGLNSPQNGITGPP 140
            P++     +  G+   D     G        + + F+  P K                 
Sbjct: 217 HPSSSAFPYKVDGYGTPDSWHYQGTIAPPTEYYHDHFNQVPFK----------------- 259

Query: 141 IWSIPPLLPTMSCSLGALLSRLPSVIP 167
                 + P+MS SL ALLS+LPSV+P
Sbjct: 260 ------ITPSMS-SLEALLSKLPSVVP 279