Jatropha Genome Database

JcCB0603751.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0603751.10 - phase: 0 /partial
         (141 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m013949 1-deoxy-D-xylulose 5-phosphate reductoisomerase, c...   278   7e-76

>30147.m013949 1-deoxy-D-xylulose 5-phosphate reductoisomerase,
           chloroplast precursor, putative
          Length = 467

 Score =  278 bits (710), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 132/138 (95%), Positives = 135/138 (97%)

Query: 4   GLEVIEAHYLLGADYDNIEIVIHPQSIIHSMVETEDSSVLAQLGWPDMRLPILYTMSWPD 63
           GLEVIEAHYL GADYDNIEIVIHPQSIIHSMVETEDSSVLAQLGWPDMR+PILYTMSWPD
Sbjct: 288 GLEVIEAHYLFGADYDNIEIVIHPQSIIHSMVETEDSSVLAQLGWPDMRIPILYTMSWPD 347

Query: 64  RISCSEITWPRLDLCKQGSLTFKAPDNVKYPSMDLAYAAGRAGGTMTGVLSAANEKAVEM 123
           RI CSEITWPRLDLCK GSLTFKAPDNVKYPSM+LAYAAGRAGGTMTGVLSAANEKAVEM
Sbjct: 348 RIYCSEITWPRLDLCKLGSLTFKAPDNVKYPSMELAYAAGRAGGTMTGVLSAANEKAVEM 407

Query: 124 FIDEKISYLDIFKIVELT 141
           FIDE+ISYLDIFKIVELT
Sbjct: 408 FIDEQISYLDIFKIVELT 425