Jatropha Genome Database

JcCB0603701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0603701.10 - phase: 0 /partial
         (136 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30204.m001780 conserved hypothetical protein                          218   5e-58
29904.m002974 conserved hypothetical protein                          169   4e-43
29656.m000478 conserved hypothetical protein                           82   6e-17
30075.m001169 hypothetical protein                                     67   3e-12

>30204.m001780 conserved hypothetical protein
          Length = 291

 Score =  218 bits (556), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 102/137 (74%), Positives = 120/137 (87%), Gaps = 1/137 (0%)

Query: 1   GNLGWAYMQKSNFLAAEAVYQKAQMIDPDANKACNLGLCLIKQARFDEAQFVLQNVMEGR 60
           GNLGWAYMQKSNF+AAE VY+KAQMIDPDANKA NLG CLI+QAR+DEA+ +LQNV+EGR
Sbjct: 155 GNLGWAYMQKSNFMAAEVVYKKAQMIDPDANKAYNLGFCLIRQARYDEARQILQNVLEGR 214

Query: 61  YPGSEDIKSIKRAQELLREVETKMPSPELTGILGFNLD-DHDFVKGLEEMMEEWAPARSK 119
           +PGS D KS KRAQELL E+E+K+P PELT  +G N+D D DFVKG+E+MM +WAP+R K
Sbjct: 215 FPGSNDCKSRKRAQELLMEMESKLPPPELTNRIGINVDGDDDFVKGIEQMMNKWAPSRPK 274

Query: 120 RLPIFEQISSFRDQLAC 136
           RLPIFE+ISS RDQLAC
Sbjct: 275 RLPIFEEISSLRDQLAC 291


>29904.m002974 conserved hypothetical protein
          Length = 296

 Score =  169 bits (427), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 83/136 (61%), Positives = 104/136 (76%), Gaps = 2/136 (1%)

Query: 1   GNLGWAYMQKSNFLAAEAVYQKAQMIDPDANKACNLGLCLIKQARFDEAQFVLQNVMEGR 60
           GNLGWAYMQ+ ++LAAE VY+KAQ IDPDANKACNL LCLIKQ R+ EA  VL +V++ +
Sbjct: 163 GNLGWAYMQQGSYLAAEVVYRKAQSIDPDANKACNLCLCLIKQTRYTEAHSVLNDVLQSK 222

Query: 61  YPGSEDIKSIKRAQELLREVETKMPSPELTGILGFNLDDHDFVKGLEEMMEEWAPARSKR 120
             GSED KS  R +ELL E+ET   S  +T   G +L+D  FV+GLE++M +W+P RSKR
Sbjct: 223 LSGSEDPKSRSRVKELLHELET-CQSSVVTSPSGLSLED-AFVEGLEQLMSQWSPHRSKR 280

Query: 121 LPIFEQISSFRDQLAC 136
           LPIFE+I+  RDQLAC
Sbjct: 281 LPIFEEITPCRDQLAC 296


>29656.m000478 conserved hypothetical protein
          Length = 482

 Score = 82.4 bits (202), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 59/88 (67%), Gaps = 4/88 (4%)

Query: 1   GNLGWAYMQKSNFLAAEAVYQKAQMIDPDANKACNLGLCLIKQARFDEAQFVLQNVMEGR 60
           GNLGWA MQ++N++ AE  Y++A  I PD NK CNLG+CL+KQ R  EA+  L+ V    
Sbjct: 180 GNLGWALMQQNNYVEAEDAYRRALSIAPDNNKMCNLGICLMKQGRISEAKDTLRRVKPAV 239

Query: 61  YPGSEDI----KSIKRAQELLREVETKM 84
             G   +    K+ +RAQ++L+++E++M
Sbjct: 240 ADGPRGVDSHLKAYERAQQMLKDLESEM 267


>30075.m001169 hypothetical protein
          Length = 618

 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 54/87 (62%), Gaps = 7/87 (8%)

Query: 1   GNLGWAYMQKSNFLAAEAVYQKAQMIDPDANKACNLGLCLIKQARFDEAQFVLQNVMEGR 60
           GNL WAY+Q  ++  AE  Y+KA  ++PD NK CNL LCL+   +  EA+ +LQ V +  
Sbjct: 106 GNLAWAYLQHHDYGLAEQHYRKALSVEPDYNKQCNLALCLMHMNKIPEAKSLLQAVSDS- 164

Query: 61  YPGSEDI-----KSIKRAQELLREVET 82
             GS ++     KS +RA E+L ++E+
Sbjct: 165 -CGSTEMDESYAKSFERAVEMLNDLES 190