Jatropha Genome Database

JcCB0599321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0599321.10 + phase: 0 /partial
         (108 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30131.m007230 conserved hypothetical protein                          135   3e-33
30131.m007234 hypothetical protein                                     59   3e-10

>30131.m007230 conserved hypothetical protein
          Length = 452

 Score =  135 bits (340), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/109 (64%), Positives = 87/109 (79%), Gaps = 2/109 (1%)

Query: 2   IDRPNEARAMYEKLQSHSSPKVSKKARQFMFSFQAMEMMKVTGSNFSPKSTGYRKYFEKF 61
           + R NEA+AMYEKLQSH + KVSKKARQFMFSFQAMEM+KVTGS+F P+STGY+ YFE F
Sbjct: 344 LSRQNEAQAMYEKLQSHPNAKVSKKARQFMFSFQAMEMLKVTGSSFLPESTGYQNYFEAF 403

Query: 62  IDDNV--TNYLVEEAESRGALSEALPYMVFLVSPIFIVLFIAVQRGNIN 108
           ++D    +    E  E  G LS+ALPY++FLVSP+FIVL +AVQ G+I+
Sbjct: 404 VEDKTKYSPGEGESEEEGGGLSQALPYVLFLVSPVFIVLLMAVQGGSIH 452


>30131.m007234 hypothetical protein
          Length = 88

 Score = 59.3 bits (142), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/48 (60%), Positives = 36/48 (75%), Gaps = 3/48 (6%)

Query: 1  MIDRPNEARAMYEKLQSHSSPKVSKKARQFMFSFQAME---MMKVTGS 45
          MIDR NEA+AMYEKLQSH   +V KKARQ  FSFQ ++   +M+ TG+
Sbjct: 36 MIDRRNEAQAMYEKLQSHPDAEVCKKARQIKFSFQVVDVDRVMRTTGN 83