Jatropha Genome Database

JcCB0597261.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0597261.20 + phase: 0 /partial
         (82 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27894.m000784 similarity to rab3 gtpase-activating protein non-c...   158   6e-40

>27894.m000784 similarity to rab3 gtpase-activating protein
          non-catalitic subunit, putative
          Length = 484

 Score =  158 bits (399), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 75/82 (91%), Positives = 80/82 (97%)

Query: 1  MSSKRNHTTELGCIACEELSDVGAGKEGWLVDNPSLLCALDTHSIALANRSLILITGWDD 60
          MSSKR+HTTELGCIACEELSDVGAGKEGWLVDNP+L CALDTHSIA++NR LILITGWDD
Sbjct: 1  MSSKRSHTTELGCIACEELSDVGAGKEGWLVDNPNLKCALDTHSIAISNRYLILITGWDD 60

Query: 61 GPRLKIRPNLSPIESESITALE 82
          GPRLKIRP+LSPIESESITALE
Sbjct: 61 GPRLKIRPDLSPIESESITALE 82