Jatropha Genome Database

JcCB0590701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0590701.10 - phase: 0 /pseudo
         (104 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29889.m003249 importin alpha, putative                                111   6e-26
30128.m008884 importin alpha, putative                                109   2e-25
30128.m008927 importin alpha, putative                                 94   9e-21
30076.m004698 importin alpha, putative                                 83   4e-17

>29889.m003249 importin alpha, putative
          Length = 488

 Score =  111 bits (278), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 52/53 (98%), Positives = 53/53 (100%)

Query: 1  MSLRPSARTEVRRNKYKVAVDADEGRRRREDNMVEIRKNKREENLQKKRREGL 53
          MSLRPSARTEVRRN+YKVAVDADEGRRRREDNMVEIRKNKREENLQKKRREGL
Sbjct: 1  MSLRPSARTEVRRNRYKVAVDADEGRRRREDNMVEIRKNKREENLQKKRREGL 53


>30128.m008884 importin alpha, putative
          Length = 531

 Score =  109 bits (273), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/76 (71%), Positives = 63/76 (82%), Gaps = 5/76 (6%)

Query: 1  MSLRPSARTEVRRNKYKVAVDADEGRRRREDNMVEIRKNKREENLQKKRREGLXXXXXXX 60
          MSLRPSARTEVRRN+YKVAVDA+EGRRRREDNMVEIRKN+REE+LQKKRREGL       
Sbjct: 1  MSLRPSARTEVRRNRYKVAVDAEEGRRRREDNMVEIRKNRREESLQKKRREGL-----QA 55

Query: 61 XXLTSSFTNSANDKKV 76
            + +S  +SA +KK+
Sbjct: 56 QPMPASLHSSAVEKKL 71


>30128.m008927 importin alpha, putative
          Length = 450

 Score = 94.4 bits (233), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 43/53 (81%), Positives = 46/53 (86%)

Query: 1  MSLRPSARTEVRRNKYKVAVDADEGRRRREDNMVEIRKNKREENLQKKRREGL 53
          MSLRPS RTEVR+  YK  VDADE RRRREDN+VEIRKNKRE+NL KKRREGL
Sbjct: 1  MSLRPSTRTEVRKKSYKTGVDADEARRRREDNLVEIRKNKREDNLLKKRREGL 53


>30076.m004698 importin alpha, putative
          Length = 78

 Score = 82.8 bits (203), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/70 (78%), Positives = 60/70 (85%), Gaps = 2/70 (2%)

Query: 1  MSLRPSARTEVRRNKYKVAVDADEGRRRREDNMVEIRKNKREENLQKKRREGLXXXXXXX 60
          MSLRPSARTEVRRNKYKVAVDA+EGRRRRE+N++EIRKNKREENLQKKRREGL       
Sbjct: 1  MSLRPSARTEVRRNKYKVAVDAEEGRRRREENIIEIRKNKREENLQKKRREGL--QAAQQ 58

Query: 61 XXLTSSFTNS 70
            LTSSF N+
Sbjct: 59 QQLTSSFANA 68